Information for 3-CCCGTCTGGTTCC (Motif 2)

A G T C A G T C G A T C A C T G A C G T A G T C A C G T A C T G A C T G A C G T A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A T C G A A G T C A G T C C G T A A C T G C G T A A G T C C A T G A C T G A C T G
p-value:1e-13
log p-value:-3.122e+01
Information Content per bp:1.916
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.8 +/- 24.0bp
Average Position of motif in Background28.0 +/- 11.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CCCGTCTGGTTCC
-CTGTCTGG----
 A G T C A G T C G A T C A C T G A C G T A G T C A C G T A C T G A C T G A C G T A C G T A G T C A G T C
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CCCGTCTGGTTCC
VBSYGTCTGG----
 A C G T A G T C A G T C G A T C A C T G A C G T A G T C A C G T A C T G A C T G A C G T A C G T A G T C A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CCCGTCTGGTTCC-
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A G T C A G T C G A T C A C T G A C G T A G T C A C G T A C T G A C T G A C G T A C G T A G T C A G T C A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CCCGTCTGGTTCC
--GGTCTGGCAT-
 A G T C A G T C G A T C A C T G A C G T A G T C A C G T A C T G A C T G A C G T A C G T A G T C A G T C
A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCCGTCTGGTTCC-
-CTGTCTGTCACCT
 A G T C A G T C G A T C A C T G A C G T A G T C A C G T A C T G A C T G A C G T A C G T A G T C A G T C A C G T
A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCCGTCTGGTTCC-
--TGTCTGDCACCT
 A G T C A G T C G A T C A C T G A C G T A G T C A C G T A C T G A C T G A C G T A C G T A G T C A G T C A C G T
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CCCGTCTGGTTCC
-TWGTCTGV----
 A G T C A G T C G A T C A C T G A C G T A G T C A C G T A C T G A C T G A C G T A C G T A G T C A G T C
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CCCGTCTGGTTCC-
--CAGCTGTTTCCT
 A G T C A G T C G A T C A C T G A C G T A G T C A C G T A C T G A C T G A C G T A C G T A G T C A G T C A C G T
A C G T A C G T G T A C C G T A C A T G T A G C A G C T A C T G A G C T G C A T A C G T A G T C A G T C A G C T

PB0151.1_Myf6_2/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CCCGTCTGGTTCC
GGNGCGNCTGTTNNN
 A C G T A C G T A G T C A G T C G A T C A C T G A C G T A G T C A C G T A C T G A C T G A C G T A C G T A G T C A G T C
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:10
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----CCCGTCTGGTTCC
GGGGCTYGKCTGGGA--
 A C G T A C G T A C G T A C G T A G T C A G T C G A T C A C T G A C G T A G T C A C G T A C T G A C T G A C G T A C G T A G T C A G T C
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A A C G T A C G T