Information for 11-CCAGTCGCCY (Motif 34)

T A G C G T A C G C T A C T A G G A C T G A T C C A T G T A G C A T G C G A T C
Reverse Opposite:
C T A G T A C G A T C G G T A C C T A G C T G A G A T C C G A T A C T G A T C G
p-value:1e-5
log p-value:-1.309e+01
Information Content per bp:1.541
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.48%
Number of Background Sequences with motif115.6
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets51.4 +/- 22.9bp
Average Position of motif in Background51.5 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CCAGTCGCCY
CCAGACRSVB
 T A G C G T A C G C T A C T A G G A C T G A T C C A T G T A G C A T G C G A T C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCAGTCGCCY
CCAGACAG--
 T A G C G T A C G C T A C T A G G A C T G A T C C A T G T A G C A T G C G A T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCAGTCGCCY
ATGCCAGACN---
 A C G T A C G T A C G T T A G C G T A C G C T A C T A G G A C T G A T C C A T G T A G C A T G C G A T C
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CCAGTCGCCY
ACTAGCCAATCA---
 A C G T A C G T A C G T A C G T A C G T T A G C G T A C G C T A C T A G G A C T G A T C C A T G T A G C A T G C G A T C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:5
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CCAGTCGCCY
ATTTCCCAGVAKSCY
 A C G T A C G T A C G T A C G T A C G T T A G C G T A C G C T A C T A G G A C T G A T C C A T G T A G C A T G C G A T C
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CCAGTCGCCY--
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T T A G C G T A C G C T A C T A G G A C T G A T C C A T G T A G C A T G C G A T C A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCAGTCGCCY
AGCCAATCGG--
 A C G T A C G T T A G C G T A C G C T A C T A G G A C T G A T C C A T G T A G C A T G C G A T C
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:8
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------CCAGTCGCCY
AAATGGACCAATCAG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G T A C G C T A C T A G G A C T G A T C C A T G T A G C A T G C G A T C
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CCAGTCGCCY----
TGGACCAATCAGCACTCT
 A C G T A C G T A C G T A C G T T A G C G T A C G C T A C T A G G A C T G A T C C A T G T A G C A T G C G A T C A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

PB0151.1_Myf6_2/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CCAGTCGCCY-
AGCAACAGCCGCACC
 A C G T A C G T A C G T A C G T T A G C G T A C G C T A C T A G G A C T G A T C C A T G T A G C A T G C G A T C A C G T
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C