Information for 2-CGAGTTGATG (Motif 19)

G T A C C T A G C G T A A C T G A C G T A C G T A C T G C G T A A C G T A C T G
Reverse Opposite:
A G T C C G T A G C A T A G T C C G T A C G T A A G T C C G A T A G T C C A T G
p-value:1e-9
log p-value:-2.163e+01
Information Content per bp:1.871
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif26.2
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets50.6 +/- 26.1bp
Average Position of motif in Background43.1 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0134.1_Pbx1/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CGAGTTGATG-----
NNNNNATTGATGNGTGN
 A C G T A C G T G T A C C T A G C G T A A C T G A C G T A C G T A C T G C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CGAGTTGATG---
---GTTAATGGCC
 G T A C C T A G C G T A A C T G A C G T A C G T A C T G C G T A A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

PB0117.1_Eomes_2/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CGAGTTGATG----
GCGGAGGTGTCGCCTC
 A C G T A C G T G T A C C T A G C G T A A C T G A C G T A C G T A C T G C G T A A C G T A C T G A C G T A C G T A C G T A C G T
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C

PB0105.1_Arid3a_2/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CGAGTTGATG-----
NNATNTGATANNNNN
 G T A C C T A G C G T A A C T G A C G T A C G T A C T G C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
G T C A C T G A G C T A A G C T G C A T G A C T A T C G T C G A A G C T T C G A A G T C A T C G A C T G C A T G C A G T

PB0120.1_Foxj1_2/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CGAGTTGATG------
-GTNTTGTTGTGANNT
 G T A C C T A G C G T A A C T G A C G T A C G T A C T G C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G A G C T T A C G G A C T G C A T A C T G A C G T G A C T C T A G A G C T A C T G T G C A A G T C T C G A C G A T

PB0122.1_Foxk1_2/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CGAGTTGATG----
NNNTGTTGTTGTTNG
 A C G T G T A C C T A G C G T A A C T G A C G T A C G T A C T G C G T A A C G T A C T G A C G T A C G T A C G T A C G T
C T G A C A T G C T A G G C A T C T A G G C A T A C G T C T A G A G C T A C G T C T A G G A C T C A G T C G A T C A T G

Arid3a/MA0151.1/Jaspar

Match Rank:7
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CGAGTTGATG
---TTTAAT-
 G T A C C T A G C G T A A C T G A C G T A C G T A C T G C G T A A C G T A C T G
A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:8
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CGAGTTGATG----
----ATGATGCAAT
 G T A C C T A G C G T A A C T G A C G T A C G T A C T G C G T A A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A A G C T A C T G C G T A A G C T C A T G G A T C T G C A C G T A A G C T

PB0150.1_Mybl1_2/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CGAGTTGATG-
CACGGCAGTTGGTNN
 A C G T A C G T A C G T A C G T G T A C C T A G C G T A A C T G A C G T A C G T A C T G C G T A A C G T A C T G A C G T
T G A C C G T A A G T C C A T G C T A G A G T C T C G A A C T G A C G T C A G T C T A G C T A G A C G T T A G C T A C G

ZNF354C/MA0130.1/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CGAGTTGATG
---GTGGAT-
 G T A C C T A G C G T A A C T G A C G T A C G T A C T G C G T A A C G T A C T G
A C G T A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T A C G T