Information for 1-AATCTAATTT (Motif 17)

T C G A G T C A A C G T A T G C C G A T T G C A G T C A G C A T G A C T A C G T
Reverse Opposite:
T G C A C T G A C G T A C A G T A C G T G C T A T A C G T G C A C A G T A G C T
p-value:1e-9
log p-value:-2.195e+01
Information Content per bp:1.650
Number of Target Sequences with motif93.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif3092.7
Percentage of Background Sequences with motif6.26%
Average Position of motif in Targets55.0 +/- 24.3bp
Average Position of motif in Background49.9 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PHOX2A/MA0713.1/Jaspar

Match Rank:1
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-AATCTAATTT
TAATTTAATTA
 A C G T T C G A G T C A A C G T A T G C C G A T T G C A G T C A G C A T G A C T A C G T
G C A T C T G A C T G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

Phox2b/MA0681.1/Jaspar

Match Rank:2
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-AATCTAATTT
TAATTTAATTA
 A C G T T C G A G T C A A C G T A T G C C G A T T G C A G T C A G C A T G A C T A C G T
G C A T C T G A T C G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

PROP1/MA0715.1/Jaspar

Match Rank:3
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AATCTAATTT
TAATTTAATTA
 A C G T T C G A G T C A A C G T A T G C C G A T T G C A G T C A G C A T G A C T A C G T
G C A T C G T A C T G A G C A T G A C T C G A T G T C A C T G A C G A T G A C T C G T A

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-AATCTAATTT-
TAATYNRATTAR
 A C G T T C G A G T C A A C G T A T G C C G A T T G C A G T C A G C A T G A C T A C G T A C G T
G C A T C G T A C G T A G A C T A G C T G C A T T C G A T C G A A C G T G A C T C G T A C T A G

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:5
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AATCTAATTT
NTAATBNAATTA
 A C G T A C G T T C G A G T C A A C G T A T G C C G A T T G C A G T C A G C A T G A C T A C G T
G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A

MIXL1/MA0662.1/Jaspar

Match Rank:6
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:AATCTAATTT--
--NNTAATTANN
 T C G A G T C A A C G T A T G C C G A T T G C A G T C A G C A T G A C T A C G T A C G T A C G T
A C G T A C G T A C T G A G C T C G A T T C G A T C G A C G A T A G C T C T G A T C A G G C T A

PAX4/MA0068.2/Jaspar

Match Rank:7
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:AATCTAATTT-
---CTAATTAG
 T C G A G T C A A C G T A T G C C G A T T G C A G T C A G C A T G A C T A C G T A C G T
A C G T A C G T A C G T A G T C C A G T C G T A G T C A A C G T C G A T G T C A T C A G

EN1/MA0027.2/Jaspar

Match Rank:8
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:AATCTAATTT-
---CTAATTAG
 T C G A G T C A A C G T A T G C C G A T T G C A G T C A G C A T G A C T A C G T A C G T
A C G T A C G T A C G T A G T C G C A T T C G A C G T A A C G T A C G T C T G A T A C G

VSX2/MA0726.1/Jaspar

Match Rank:9
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AATCTAATTT-
---CTAATTAG
 T C G A G T C A A C G T A T G C C G A T T G C A G T C A G C A T G A C T A C G T A C G T
A C G T A C G T A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G

SHOX/MA0630.1/Jaspar

Match Rank:10
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AATCTAATTT-
---TTAATTGG
 T C G A G T C A A C G T A T G C C G A T T G C A G T C A G C A T G A C T A C G T A C G T
A C G T A C G T A C G T G A C T G C A T T C G A C T G A A C G T C G A T C T A G T C A G