Information for 7-GTTTTTAAAA (Motif 6)

C T A G C G A T C G A T C G A T C A G T A C G T T C G A C T G A C T G A C G T A
Reverse Opposite:
G C A T G A C T G A C T A G C T T G C A G T C A C G T A G C T A G C T A G A T C
p-value:1e-6
log p-value:-1.471e+01
Information Content per bp:1.575
Number of Target Sequences with motif137.0
Percentage of Target Sequences with motif16.91%
Number of Background Sequences with motif5264.7
Percentage of Background Sequences with motif11.07%
Average Position of motif in Targets49.3 +/- 29.9bp
Average Position of motif in Background49.9 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:GTTTTTAAAA---
---TTTGAAACCG
 C T A G C G A T C G A T C G A T C A G T A C G T T C G A C T G A C T G A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.74
Offset:2
Orientation:forward strand
Alignment:GTTTTTAAAA-
--ATTTGAATT
 C T A G C G A T C G A T C G A T C A G T A C G T T C G A C T G A C T G A C G T A A C G T
A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

PB0187.1_Tcf7_2/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTTAAAA---
NNNTTTNTAATACNG
 A C G T A C G T C T A G C G A T C G A T C G A T C A G T A C G T T C G A C T G A C T G A C G T A A C G T A C G T A C G T
C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G

PB0148.1_Mtf1_2/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GTTTTTAAAA---
NNTTTTTCTTATNT
 A C G T C T A G C G A T C G A T C G A T C A G T A C G T T C G A C T G A C T G A C G T A A C G T A C G T A C G T
A C T G G C A T A C G T C G A T C G A T C G A T C A G T G T A C C G A T C G A T G T C A C G A T G C A T C A G T

PB0145.1_Mafb_2/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTTAAAA---
ANATTTTTGCAANTN
 A C G T A C G T C T A G C G A T C G A T C G A T C A G T A C G T T C G A C T G A C T G A C G T A A C G T A C G T A C G T
C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

HOXD11/MA0908.1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GTTTTTAAAA-
-NTTTTACGAC
 C T A G C G A T C G A T C G A T C A G T A C G T T C G A C T G A C T G A C G T A A C G T
A C G T C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C

PB0080.1_Tbp_1/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GTTTTTAAAA---
TCTTTATATATAAATA
 A C G T A C G T A C G T C T A G C G A T C G A T C G A T C A G T A C G T T C G A C T G A C T G A C G T A A C G T A C G T A C G T
A G C T A G T C G C A T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A G T C A C A G T T C G A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GTTTTTAAAA--
--TTTTATTRGN
 C T A G C G A T C G A T C G A T C A G T A C G T T C G A C T G A C T G A C G T A A C G T A C G T
A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

PB0182.1_Srf_2/Jaspar

Match Rank:9
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------GTTTTTAAAA-
NNNNTTTTTTTTTNAAC
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G A T C G A T C G A T C A G T A C G T T C G A C T G A C T G A C G T A A C G T
C G A T C G T A T C G A A C G T C A G T C A G T C A G T C G A T A C G T A C G T A C G T G A C T G A C T G C A T G C T A T G C A A T G C

Arid3b/MA0601.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GTTTTTAAAA-
NTAATTAATAT
 C T A G C G A T C G A T C G A T C A G T A C G T T C G A C T G A C T G A C G T A A C G T
A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T