Information for 7-TTTTATTTCAGAA (Motif 4)

A C G T A C G T G A C T A C G T C T G A G A C T A C G T A C G T G A T C C G T A C A T G G T C A C T G A
Reverse Opposite:
A G C T A C G T G T A C C G A T C A T G T C G A C G T A C G T A A G C T T G C A C G T A T C G A C G T A
p-value:1e-8
log p-value:-2.020e+01
Information Content per bp:1.764
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.48%
Number of Background Sequences with motif63.7
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets40.1 +/- 31.8bp
Average Position of motif in Background51.6 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0046.1_Hoxa10/Jaspar

Match Rank:1
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATTTCAGAA
TNAATTTTATTACCTN-
 A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C G T C T G A G A C T A C G T A C G T G A T C C G T A C A T G G T C A C T G A
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTTCAGAA
NTTTTATGAC----
 A C G T A C G T A C G T G A C T A C G T C T G A G A C T A C G T A C G T G A T C C G T A C A T G G T C A C T G A
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTTCAGAA
NTTTTATTACN---
 A C G T A C G T A C G T G A C T A C G T C T G A G A C T A C G T A C G T G A T C C G T A C A T G G T C A C T G A
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTTCAGAA
TTTTTATTGC----
 A C G T A C G T A C G T G A C T A C G T C T G A G A C T A C G T A C G T G A T C C G T A C A T G G T C A C T G A
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TTTTATTTCAGAA
TTTTATTGC----
 A C G T A C G T G A C T A C G T C T G A G A C T A C G T A C G T G A T C C G T A C A T G G T C A C T G A
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TTTTATTTCAGAA
TTTTATGGCTN--
 A C G T A C G T G A C T A C G T C T G A G A C T A C G T A C G T G A T C C G T A C A T G G T C A C T G A
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTTCAGAA
NTTTTATTGG----
 A C G T A C G T A C G T G A C T A C G T C T G A G A C T A C G T A C G T G A T C C G T A C A T G G T C A C T G A
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T A C G T A C G T

CEBPA/MA0102.3/Jaspar

Match Rank:8
Score:0.63
Offset:4
Orientation:forward strand
Alignment:TTTTATTTCAGAA--
----ATTGCACAATA
 A C G T A C G T G A C T A C G T C T G A G A C T A C G T A C G T G A T C C G T A C A T G G T C A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T T C G A A C G T A C G T C A T G A G T C T G C A G A T C G T C A C G T A A G C T G T C A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TTTTATTTCAGAA
TTTTATTRGN---
 A C G T A C G T G A C T A C G T C T G A G A C T A C G T A C G T G A T C C G T A C A T G G T C A C T G A
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATTTCAGAA
NNANTTTTATTGGNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C G T C T G A G A C T A C G T A C G T G A T C C G T A C A T G G T C A C T G A
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G A C G T