Information for 4-GCAGTACGTA (Motif 4)

A T C G A G T C C G T A A C T G A C G T C G T A A G T C A T C G A C G T C G T A
Reverse Opposite:
A C G T C G T A A T G C C T A G A C G T G T C A A G T C G A C T A C T G A T G C
p-value:1e-13
log p-value:-3.134e+01
Information Content per bp:1.870
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.7 +/- 24.2bp
Average Position of motif in Background51.7 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GMEB2/MA0862.1/Jaspar

Match Rank:1
Score:0.72
Offset:3
Orientation:forward strand
Alignment:GCAGTACGTA-
---TTACGTAA
 A T C G A G T C C G T A A C T G A C G T C G T A A G T C A T C G A C G T C G T A A C G T
A C G T A C G T A C G T A C G T C A G T C T G A G T A C A T C G A G C T T G C A T G C A

Gmeb1/MA0615.1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GCAGTACGTA-----
NNNTNGTACGTAANNNN
 A C G T A C G T A T C G A G T C C G T A A C T G A C G T C G T A A G T C A T C G A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A T G C A G T C T C G A G C A T A T G C C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T G C A T G A C C A G T T A G C

PB0027.1_Gmeb1_1/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GCAGTACGTA-----
NNNTNGTACGTAANNNN
 A C G T A C G T A T C G A G T C C G T A A C T G A C G T C G T A A G T C A T C G A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A T G C A G T C T C G A G C A T A T G C C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T G C A T G A C C A G T T A G C

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:4
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GCAGTACGTA
--BGCACGTA
 A T C G A G T C C G T A A C T G A C G T C G T A A G T C A T C G A C G T C G T A
A C G T A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:5
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GCAGTACGTA---
---GCACGTACCC
 A T C G A G T C C G T A A C T G A C G T C G T A A G T C A T C G A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

TEF/MA0843.1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCAGTACGTA---
-TATTACGTAACA
 A T C G A G T C C G T A A C T G A C G T C G T A A G T C A T C G A C G T C G T A A C G T A C G T A C G T
A C G T A G C T T C G A G C A T C G A T C T G A G A T C C T A G A G C T G C T A C T G A A G T C T G C A

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:7
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GCAGTACGTA-
---GCACGTAY
 A T C G A G T C C G T A A C T G A C G T C G T A A G T C A T C G A C G T C G T A A C G T
A C G T A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

DBP/MA0639.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCAGTACGTA---
-TATTACGTAACA
 A T C G A G T C C G T A A C T G A C G T C G T A A G T C A T C G A C G T C G T A A C G T A C G T A C G T
A C G T A C G T T C G A G C A T A C G T C T G A A G T C T C A G A G C T T G C A C G T A A G T C T C G A

Crem/MA0609.1/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCAGTACGTA-
-TATGACGTAA
 A T C G A G T C C G T A A C T G A C G T C G T A A G T C A T C G A C G T C G T A A C G T
A C G T A C G T C T G A A C G T A C T G C G T A A G T C A C T G A C G T G T C A C G T A

PH0117.1_Nkx3-1/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GCAGTACGTA----
TACTAAGTACTTAAATG
 A C G T A C G T A C G T A T C G A G T C C G T A A C T G A C G T C G T A A G T C A T C G A C G T C G T A A C G T A C G T A C G T A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G