Information for 16-GCAGGCTAAT (Motif 30)

T C A G G T A C G T C A C T A G A C T G T G A C G A C T C G T A C G T A G A C T
Reverse Opposite:
C T G A C G A T G C A T C G T A A C T G G T A C A G T C A C G T C A T G A G T C
p-value:1e-6
log p-value:-1.417e+01
Information Content per bp:1.709
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.3 +/- 19.1bp
Average Position of motif in Background44.1 +/- 1.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCAGGCTAAT---
-TATGCWAATBAV
 T C A G G T A C G T C A C T A G A C T G T G A C G A C T C G T A C G T A G A C T A C G T A C G T A C G T
A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

EVX1/MA0887.1/Jaspar

Match Rank:2
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:GCAGGCTAAT----
----GNTAATTANN
 T C A G G T A C G T C A C T A G A C T G T G A C G A C T C G T A C G T A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T C G T A G C G A C T C T G A T G C A A G C T A G C T C T G A A T G C A G T C

EVX2/MA0888.1/Jaspar

Match Rank:3
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:GCAGGCTAAT----
----NNTAATTANN
 T C A G G T A C G T C A C T A G A C T G T G A C G A C T C G T A C G T A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G A T G C G A C T T C G A T G C A A G C T A C G T C T G A A T G C A T G C

HOXA2/MA0900.1/Jaspar

Match Rank:4
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:GCAGGCTAAT----
----GNTAATTANN
 T C A G G T A C G T C A C T A G A C T G T G A C G A C T C G T A C G T A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T C G A T C G C G A T C T G A G T C A A G C T A C G T C T G A A T C G A T C G

HOXB3/MA0903.1/Jaspar

Match Rank:5
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GCAGGCTAAT----
----NNTAATTANN
 T C A G G T A C G T C A C T A G A C T G T G A C G A C T C G T A C G T A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G A G T C C G A T C T G A C T G A A G C T A C G T C T G A A T C G G A C T

HOXB2/MA0902.1/Jaspar

Match Rank:6
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GCAGGCTAAT----
----NNTAATTANN
 T C A G G T A C G T C A C T A G A C T G T G A C G A C T C G T A C G T A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G A G C T C G A T C T G A C G T A A G C T A C G T C T G A A T G C A G C T

PH0015.1_Crx/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCAGGCTAAT--------
--AGGCTAATCCCCAANG
 T C A G G T A C G T C A C T A G A C T G T G A C G A C T C G T A C G T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

BARX1/MA0875.1/Jaspar

Match Rank:8
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GCAGGCTAAT---
-----NTAATTGN
 T C A G G T A C G T C A C T A G A C T G T G A C G A C T C G T A C G T A G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C

Barhl1/MA0877.1/Jaspar

Match Rank:9
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GCAGGCTAAT----
----GCTAATTGCT
 T C A G G T A C G T C A C T A G A C T G T G A C G A C T C G T A C G T A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCAGGCTAAT---
-WATGCAAATGAG
 T C A G G T A C G T C A C T A G A C T G T G A C G A C T C G T A C G T A G A C T A C G T A C G T A C G T
A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G