Information for 20-CTGTCTAAGGCAT (Motif 22)

A G T C C G A T A C T G A C G T A T G C C G A T C G T A C G T A A C T G A C T G A G T C C G T A A G C T
Reverse Opposite:
C T G A A C G T A C T G A G T C A G T C A C G T A C G T C G T A A T C G C G T A A G T C C G T A A C T G
p-value:1e-7
log p-value:-1.742e+01
Information Content per bp:1.933
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.0 +/- 22.2bp
Average Position of motif in Background20.0 +/- 11.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CTGTCTAAGGCAT
-AGCCTCAGGCA-
 A G T C C G A T A C T G A C G T A T G C C G A T C G T A C G T A A C T G A C T G A G T C C G T A A G C T
A C G T G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CTGTCTAAGGCAT
-AGCCTCAGGCA-
 A G T C C G A T A C T G A C G T A T G C C G A T C G T A C G T A A C T G A C T G A G T C C G T A A G C T
A C G T G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CTGTCTAAGGCAT
-CGCCTCAGGCA-
 A G T C C G A T A C T G A C G T A T G C C G A T C G T A C G T A A C T G A C T G A G T C C G T A A G C T
A C G T G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:4
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CTGTCTAAGGCAT
GNCTATAAAAGG---
 A C G T A C G T A G T C C G A T A C T G A C G T A T G C C G A T C G T A C G T A A C T G A C T G A G T C C G T A A G C T
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCTAAGGCAT
GCTGTCAA------
 A C G T A G T C C G A T A C T G A C G T A T G C C G A T C G T A C G T A A C T G A C T G A G T C C G T A A G C T
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:6
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CTGTCTAAGGCAT--
ATGCATWATGCATRW
 A G T C C G A T A C T G A C G T A T G C C G A T C G T A C G T A A C T G A C T G A G T C C G T A A G C T A C G T A C G T
C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.53
Offset:7
Orientation:forward strand
Alignment:CTGTCTAAGGCAT--
-------AGGCCTNG
 A G T C C G A T A C T G A C G T A T G C C G A T C G T A C G T A A C T G A C T G A G T C C G T A A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCTAAGGCAT-
ANTGCCTGAGGCAAN
 A C G T A G T C C G A T A C T G A C G T A T G C C G A T C G T A C G T A A C T G A C T G A G T C C G T A A G C T A C G T
C G T A C A G T G A C T C A T G G A T C G A T C C A G T T A C G T G C A C A T G C A T G A G T C C G T A G T C A G A C T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.52
Offset:6
Orientation:forward strand
Alignment:CTGTCTAAGGCAT----
------AAGGCAAGTGT
 A G T C C G A T A C T G A C G T A T G C C G A T C G T A C G T A A C T G A C T G A G T C C G T A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CTGTCTAAGGCAT
GCTGTG--------
 A C G T A G T C C G A T A C T G A C G T A T G C C G A T C G T A C G T A A C T G A C T G A G T C C G T A A G C T
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T