Information for 18-WCCTCCAGTGYCC (Motif 20)

G C T A G T A C A G T C C G A T A T G C A G T C C G T A A C T G A C G T A C T G G A C T A T G C A G T C
Reverse Opposite:
A C T G A T C G C T G A A G T C G T C A A G T C C G A T C T A G A T C G C G T A A C T G A C T G C G A T
p-value:1e-8
log p-value:-1.921e+01
Information Content per bp:1.780
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif32.2
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets55.8 +/- 17.3bp
Average Position of motif in Background40.3 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--WCCTCCAGTGYCC-
TGACCTNTAGTAACCC
 A C G T A C G T G C T A G T A C A G T C C G A T A T G C A G T C C G T A A C T G A C G T A C T G G A C T A T G C A G T C A C G T
G A C T C T A G T G C A G T A C G A T C A G C T T A C G C A G T C T G A C T A G G C A T C T G A C T G A G T A C G T A C G A T C

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--WCCTCCAGTGYCC----
TGACCTAAAGTAACCTCTG
 A C G T A C G T G C T A G T A C A G T C C G A T A T G C A G T C C G T A A C T G A C G T A C T G G A C T A T G C A G T C A C G T A C G T A C G T A C G T
A G C T T C A G G T C A G T A C G A T C A G C T T C G A C T G A C T G A C T A G C G A T C T G A T C G A G T A C G T A C A G C T A G T C C A G T A C T G

PB0091.1_Zbtb3_1/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--WCCTCCAGTGYCC--
NNNANTGCAGTGCNNTT
 A C G T A C G T G C T A G T A C A G T C C G A T A T G C A G T C C G T A A C T G A C G T A C T G G A C T A T G C A G T C A C G T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--WCCTCCAGTGYCC
TGWCCTCARNTGACC
 A C G T A C G T G C T A G T A C A G T C C G A T A T G C A G T C C G T A A C T G A C G T A C T G G A C T A T G C A G T C
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:WCCTCCAGTGYCC
--CTYRAGTGSY-
 G C T A G T A C A G T C C G A T A T G C A G T C C G T A A C T G A C G T A C T G G A C T A T G C A G T C
A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:WCCTCCAGTGYCC
--NTCAAGTGG--
 G C T A G T A C A G T C C G A T A T G C A G T C C G T A A C T G A C G T A C T G G A C T A T G C A G T C
A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--WCCTCCAGTGYCC--
TGACCTTTCGTGACCTT
 A C G T A C G T G C T A G T A C A G T C C G A T A T G C A G T C C G T A A C T G A C G T A C T G G A C T A T G C A G T C A C G T A C G T
A G C T C T A G C G T A T G A C G T A C A G C T A G C T A G C T T A G C C A T G A G C T A C T G T G C A G T A C T A G C A G C T G A C T

PB0133.1_Hic1_2/Jaspar

Match Rank:8
Score:0.59
Offset:3
Orientation:forward strand
Alignment:WCCTCCAGTGYCC------
---GGGTGTGCCCAAAAGG
 G C T A G T A C A G T C C G A T A T G C A G T C C G T A A C T G A C G T A C T G G A C T A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:WCCTCCAGTGYCC
--BTBRAGTGSN-
 G C T A G T A C A G T C C G A T A T G C A G T C C G T A A C T G A C G T A C T G G A C T A T G C A G T C
A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--WCCTCCAGTGYCC
CCCCCTGCTGTG---
 A C G T A C G T G C T A G T A C A G T C C G A T A T G C A G T C C G T A A C T G A C G T A C T G G A C T A T G C A G T C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T