Information for 3-KCCAGAGGGAGSCAGM (Motif 5)

A C T G A G T C A G T C C G T A A C T G C T G A A C T G A C T G A C T G G T C A C T A G A T C G A G T C C G T A A C T G T G A C
Reverse Opposite:
A C G T G T A C A C G T A C T G A T G C A G T C A C G T A G T C A G T C A G T C A G C T A G T C A C G T A C T G A C T G G T A C
p-value:1e-16
log p-value:-3.740e+01
Information Content per bp:1.893
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.8 +/- 8.5bp
Average Position of motif in Background47.5 +/- 7.7bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----KCCAGAGGGAGSCAGM
SMCAGTCWGAKGGAGGAGGC
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C T G C T G A A C T G A C T G A C T G G T C A C T A G A T C G A G T C C G T A A C T G T G A C
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---KCCAGAGGGAGSCAGM-
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C T G C T G A A C T G A C T G A C T G G T C A C T A G A T C G A G T C C G T A A C T G T G A C A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--KCCAGAGGGAGSCAGM--
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C T G A G T C A G T C C G T A A C T G C T G A A C T G A C T G A C T G G T C A C T A G A T C G A G T C C G T A A C T G T G A C A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--KCCAGAGGGAGSCAGM-
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C T G A G T C A G T C C G T A A C T G C T G A A C T G A C T G A C T G G T C A C T A G A T C G A G T C C G T A A C T G T G A C A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--KCCAGAGGGAGSCAGM-------
RGGCAMTAGGGAGCCATRGAAGGTK
 A C G T A C G T A C T G A G T C A G T C C G T A A C T G C T G A A C T G A C T G A C T G G T C A C T A G A T C G A G T C C G T A A C T G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T A G C T A G A G T C T C G A T G C A G A C T C T G A A C T G A C T G A C T G C G T A A C T G A G T C G A T C C G T A A G C T C T A G A T C G G T C A C T G A C T A G T C A G A C G T A C G T

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--KCCAGAGGGAGSCAGM
NGTCCCNNGGGA------
 A C G T A C G T A C T G A G T C A G T C C G T A A C T G C T G A A C T G A C T G A C T G G T C A C T A G A T C G A G T C C G T A A C T G T G A C
C T A G A T C G G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--KCCAGAGGGAGSCAGM
ATGCCAGACN--------
 A C G T A C G T A C T G A G T C A G T C C G T A A C T G C T G A A C T G A C T G A C T G G T C A C T A G A T C G A G T C C G T A A C T G T G A C
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-KCCAGAGGGAGSCAGM
TGTCAGGGGGCG-----
 A C G T A C T G A G T C A G T C C G T A A C T G C T G A A C T G A C T G A C T G G T C A C T A G A T C G A G T C C G T A A C T G T G A C
C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G A C G T A C G T A C G T A C G T A C G T

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:9
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---KCCAGAGGGAGSCAGM
WTGSCCTSAGGS-------
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C T G C T G A A C T G A C T G A C T G G T C A C T A G A T C G A G T C C G T A A C T G T G A C
G C T A G A C T C A T G A T G C A G T C A G T C G A C T T A C G C T G A C T A G A C T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-KCCAGAGGGAGSCAGM
DCHCAGCAGGRGGCC--
 A C G T A C T G A G T C A G T C C G T A A C T G C T G A A C T G A C T G A C T G G T C A C T A G A T C G A G T C C G T A A C T G T G A C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T