Information for 4-GGGGGCAGTA (Motif 3)

T A C G C T A G C A T G C T A G C T A G A G T C C G T A T C A G A G C T C G T A
Reverse Opposite:
G C A T T C G A A G T C A C G T A C T G A G T C A G T C G T A C A G T C A T G C
p-value:1e-27
log p-value:-6.435e+01
Information Content per bp:1.836
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif5.58%
Number of Background Sequences with motif262.4
Percentage of Background Sequences with motif0.55%
Average Position of motif in Targets51.1 +/- 22.7bp
Average Position of motif in Background50.3 +/- 34.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GGGGGCAGTA
TNNGGGCAG--
 A C G T T A C G C T A G C A T G C T A G C T A G A G T C C G T A T C A G A G C T C G T A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GGGGGCAGTA
NGTGGGCAT--
 A C G T T A C G C T A G C A T G C T A G C T A G A G T C C G T A T C A G A G C T C G T A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:3
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GGGGGCAGTA--
NNNAAGGGGGCGGGNNN
 A C G T A C G T A C G T A C G T A C G T T A C G C T A G C A T G C T A G C T A G A G T C C G T A T C A G A G C T C G T A A C G T A C G T
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

PB0010.1_Egr1_1/Jaspar

Match Rank:4
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----GGGGGCAGTA
ANTGCGGGGGCGGN-
 A C G T A C G T A C G T A C G T A C G T T A C G C T A G C A T G C T A G C T A G A G T C C G T A T C A G A G C T C G T A
G T C A C T G A G C A T T C A G T G A C C A T G A C T G C T A G A T C G A C T G A G T C C T A G C A T G C T G A A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GGGGGCAGTA
GGTTGGCAT--
 A C G T T A C G C T A G C A T G C T A G C T A G A G T C C G T A T C A G A G C T C G T A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:6
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----GGGGGCAGTA
TGTCAGGGGGCG---
 A C G T A C G T A C G T A C G T A C G T T A C G C T A G C A T G C T A G C T A G A G T C C G T A T C A G A G C T C G T A
C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G A C G T A C G T A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGGGGCAGTA-----
NNNTGGCAGTTGGTNN
 A C G T T A C G C T A G C A T G C T A G C T A G A G T C C G T A T C A G A G C T C G T A A C G T A C G T A C G T A C G T A C G T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

PB0030.1_Hnf4a_1/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GGGGGCAGTA--
CTCCAGGGGTCAATTGA
 A C G T A C G T A C G T A C G T A C G T T A C G C T A G C A T G C T A G C T A G A G T C C G T A T C A G A G C T C G T A A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.60
Offset:-9
Orientation:reverse strand
Alignment:---------GGGGGCAGTA-
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C T A G C A T G C T A G C T A G A G T C C G T A T C A G A G C T C G T A A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Myb/MA0100.2/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GGGGGCAGTA--
--TGGCAGTTGN
 T A C G C T A G C A T G C T A G C T A G A G T C C G T A T C A G A G C T C G T A A C G T A C G T
A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G