Information for 4-AGAGTGCCCTCTA (Motif 3)

G T C A A C T G G T C A A T C G A G C T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C G T A
Reverse Opposite:
A C G T T G C A A C T G C G T A A C T G A C T G A C T G G T A C C T G A A T G C A C G T A G T C A C G T
p-value:1e-14
log p-value:-3.229e+01
Information Content per bp:1.863
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.9 +/- 12.6bp
Average Position of motif in Background53.9 +/- 9.1bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGAGTGCCCTCTA-------
ANAGTGCCACCTGGTGGCCA
 G T C A A C T G G T C A A T C G A G C T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0009.1_E2F3_1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AGAGTGCCCTCTA
ANCGCGCGCCCTTNN
 A C G T A C G T G T C A A C T G G T C A A T C G A G C T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C G T A
C G T A C G A T T A G C C T A G T A G C A T C G A T G C A C T G A G T C A T G C G A T C C G A T G C A T C G T A A G C T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGAGTGCCCTCTA-----
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T G T C A A C T G G T C A A T C G A G C T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

HIC2/MA0738.1/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AGAGTGCCCTCTA
---ATGCCCACC-
 G T C A A C T G G T C A A T C G A G C T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C G T A
A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AGAGTGCCCTCTA
---CTGCCCGCA-
 G T C A A C T G G T C A A T C G A G C T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C G T A
A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AGAGTGCCCTCTA
NNNGGGGCGCCCCCNN
 A C G T A C G T A C G T G T C A A C T G G T C A A T C G A G C T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C G T A
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:AGAGTGCCCTCTA-
----NSCACTYVAV
 G T C A A C T G G T C A A T C G A G C T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C G T A A C G T
A C G T A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

POL006.1_BREu/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGAGTGCCCTCTA
AGCGCGCC-----
 G T C A A C T G G T C A A T C G A G C T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C G T A
T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGAGTGCCCTCTA
NTCGCGCGCCTTNNN
 A C G T A C G T G T C A A C T G G T C A A T C G A G C T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C G T A
C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T

CTCF/MA0139.1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGAGTGCCCTCTA-------
-TAGCGCCCCCTGGTGGCCA
 G T C A A C T G G T C A A T C G A G C T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A