Information for 2-GBCAGSCTTCCWSCWB (Motif 2)

A T C G A G C T A G T C C G T A A C T G T A C G G A T C A C G T A C G T A G T C A G T C C G A T A T G C A G T C G C T A A C T G
Reverse Opposite:
T G A C C G A T A C T G A T C G G C T A C T A G A C T G G T C A G T C A C T A G A T G C A G T C C G A T C T A G T C G A A T G C
p-value:1e-14
log p-value:-3.301e+01
Information Content per bp:1.689
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif3.41%
Number of Background Sequences with motif220.4
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets44.9 +/- 21.7bp
Average Position of motif in Background54.1 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GBCAGSCTTCCWSCWB
TGGCAGNCTGCCAG---
 A C G T A T C G A G C T A G T C C G T A A C T G T A C G G A T C A C G T A C G T A G T C A G T C C G A T A T G C A G T C G C T A A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GBCAGSCTTCCWSCWB
--CTGTCTGTCACCT-
 A T C G A G C T A G T C C G T A A C T G T A C G G A T C A C G T A C G T A G T C A G T C C G A T A T G C A G T C G C T A A C T G
A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GBCAGSCTTCCWSCWB
GTCWGCTGTYYCTCT-
 A T C G A G C T A G T C C G T A A C T G T A C G G A T C A C G T A C G T A G T C A G T C C G A T A T G C A G T C G C T A A C T G
C T A G A C G T A G T C C G T A A C T G A G T C G C A T A C T G G C A T A G T C G A C T G A T C G C A T A G T C A G C T A C G T

Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer

Match Rank:4
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GBCAGSCTTCCWSCWB
----NRYTTCCGGH--
 A T C G A G C T A G T C C G T A A C T G T A C G G A T C A C G T A C G T A G T C A G T C C G A T A T G C A G T C G C T A A C T G
A C G T A C G T A C G T A C G T A G T C C T G A A G T C C G A T C A G T G A T C A T G C A C T G A T C G G A C T A C G T A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GBCAGSCTTCCWSCWB
GYCTGGYYTNTGTCA-
 A T C G A G C T A G T C C G T A A C T G T A C G G A T C A C G T A C G T A G T C A G T C C G A T A T G C A G T C G C T A A C T G
A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A A C G T

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GBCAGSCTTCCWSCWB
-----ACTTCCTGBT-
 A T C G A G C T A G T C C G T A A C T G T A C G G A T C A C G T A C G T A G T C A G T C C G A T A T G C A G T C G C T A A C T G
A C G T A C G T A C G T A C G T A C G T C T G A A G T C A C G T A C G T A G T C A G T C A C G T A T C G A T C G G C A T A C G T

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:7
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GBCAGSCTTCCWSCWB
---NNAYTTCCTGHN-
 A T C G A G C T A G T C C G T A A C T G T A C G G A T C A C G T A C G T A G T C A G T C C G A T A T G C A G T C G C T A A C T G
A C G T A C G T A C G T A T G C A G T C C T G A A G T C C G A T A C G T A G T C A G T C A C G T A T C G G A C T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GBCAGSCTTCCWSCWB---
----GGCCYCCTGCTGDGH
 A T C G A G C T A G T C C G T A A C T G T A C G G A T C A C G T A C G T A G T C A G T C C G A T A T G C A G T C G C T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GBCAGSCTTCCWSCWB
CTTGGCANNNTGCCAA---
 A C G T A C G T A C G T A T C G A G C T A G T C C G T A A C T G T A C G G A T C A C G T A C G T A G T C A G T C C G A T A T G C A G T C G C T A A C T G
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A A C G T A C G T A C G T

GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer

Match Rank:10
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:GBCAGSCTTCCWSCWB
-----ACTTCCGGTN-
 A T C G A G C T A G T C C G T A A C T G T A C G G A T C A C G T A C G T A G T C A G T C C G A T A T G C A G T C G C T A A C T G
A C G T A C G T A C G T A C G T A C G T T C G A A G T C G C A T G C A T A T G C A G T C A C T G A T C G A G C T A G C T A C G T