Information for 12-CAAGGCCCTCAAC (Motif 15)

A G T C C G T A C G T A A C T G A C T G A G T C G T A C A G T C A C G T A G T C C G T A G T C A A G T C
Reverse Opposite:
A C T G A C G T A C G T A C T G C G T A A C T G A C T G A C T G A G T C A G T C G A C T A C G T A C T G
p-value:1e-7
log p-value:-1.833e+01
Information Content per bp:1.939
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.2 +/- 15.9bp
Average Position of motif in Background75.4 +/- 19.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CAAGGCCCTCAAC
--AGCCACTCAAG
 A G T C C G T A C G T A A C T G A C T G A G T C G T A C A G T C A C G T A G T C C G T A G T C A A G T C
A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CAAGGCCCTCAAC
--AASCACTCAA-
 A G T C C G T A C G T A A C T G A C T G A G T C G T A C A G T C A C G T A G T C C G T A G T C A A G T C
A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAAGGCCCTCAAC
NTCAAGGTCA-----
 A C G T A C G T A G T C C G T A C G T A A C T G A C T G A G T C G T A C A G T C A C G T A G T C C G T A G T C A A G T C
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAAGGCCCTCAAC
CAAGGHCANV---
 A G T C C G T A C G T A A C T G A C T G A G T C G T A C A G T C A C G T A G T C C G T A G T C A A G T C
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CAAGGCCCTCAAC
---NSCACTYVAV
 A G T C C G T A C G T A A C T G A C T G A G T C G T A C A G T C A C G T A G T C C G T A G T C A A G T C
A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CAAGGCCCTCAAC
CTAGGCCT-----
 A G T C C G T A C G T A A C T G A C T G A G T C G T A C A G T C A C G T A G T C C G T A G T C A A G T C
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CAAGGCCCTCAAC
BTCAAGGTCA-----
 A C G T A C G T A G T C C G T A C G T A A C T G A C T G A G T C G T A C A G T C A C G T A G T C C G T A G T C A A G T C
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:8
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CAAGGCCCTCAAC
AAGTTCAAGGTCAGC---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C T G A G T C G T A C A G T C A C G T A G T C C G T A G T C A A G T C
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C A C G T A C G T A C G T

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CAAGGCCCTCAAC
-AAGACCCYYN--
 A G T C C G T A C G T A A C T G A C T G A G T C G T A C A G T C A C G T A G T C C G T A G T C A A G T C
A C G T T C G A T G C A A C T G G T C A A G T C A G T C A G T C A G T C A G C T T G A C A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CAAGGCCCTCAAC
---GGCCATTAAC
 A G T C C G T A C G T A A C T G A C T G A G T C G T A C A G T C A C G T A G T C C G T A G T C A A G T C
A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C