Information for 1-RCCACYAGGKGGCACY (Motif 1)

C T A G T A G C A G T C G T C A T A G C G A C T C G T A A C T G C T A G C A G T A C T G A C T G A G T C C T G A T A G C A G C T
Reverse Opposite:
C T G A A T C G A G C T T A C G G T A C A G T C G T C A A G T C G T A C G C A T C T G A A T C G C A G T A C T G A C T G G A T C
p-value:1e-171
log p-value:-3.949e+02
Information Content per bp:1.662
Number of Target Sequences with motif232.0
Percentage of Target Sequences with motif29.33%
Number of Background Sequences with motif1169.2
Percentage of Background Sequences with motif2.50%
Average Position of motif in Targets52.4 +/- 16.1bp
Average Position of motif in Background48.6 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.96
Offset:-2
Orientation:reverse strand
Alignment:--RCCACYAGGKGGCACY--
TGGCCACCAGGTGGCACTNT
 A C G T A C G T C T A G T A G C A G T C G T C A T A G C G A C T C G T A A C T G C T A G C A G T A C T G A C T G A G T C C T G A T A G C A G C T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.96
Offset:-2
Orientation:forward strand
Alignment:--RCCACYAGGKGGCACY-
TGGCCACCAGGGGGCGCTA
 A C G T A C G T C T A G T A G C A G T C G T C A T A G C G A C T C G T A A C T G C T A G C A G T A C T G A C T G A G T C C T G A T A G C A G C T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:RCCACYAGGKGGCACY----
GCCASCAGGGGGCGCYVNNG
 C T A G T A G C A G T C G T C A T A G C G A C T C G T A A C T G C T A G C A G T A C T G A C T G A G T C C T G A T A G C A G C T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-RCCACYAGGKGGCACY
DCHCAGCAGGRGGCC--
 A C G T C T A G T A G C A G T C G T C A T A G C G A C T C G T A A C T G C T A G C A G T A C T G A C T G A G T C C T G A T A G C A G C T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:RCCACYAGGKGGCACY
---AACAGATGGC---
 C T A G T A G C A G T C G T C A T A G C G A C T C G T A A C T G C T A G C A G T A C T G A C T G A G T C C T G A T A G C A G C T
A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-RCCACYAGGKGGCACY
CACCCCCGGGGGGG---
 A C G T C T A G T A G C A G T C G T C A T A G C G A C T C G T A A C T G C T A G C A G T A C T G A C T G A G T C C T G A T A G C A G C T
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-RCCACYAGGKGGCACY
NCNCAGCGGGGGGTC--
 A C G T C T A G T A G C A G T C G T C A T A G C G A C T C G T A A C T G C T A G C A G T A C T G A C T G A G T C C T G A T A G C A G C T
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:RCCACYAGGKGGCACY
CACAGCAGGGGG----
 C T A G T A G C A G T C G T C A T A G C G A C T C G T A A C T G C T A G C A G T A C T G A C T G A G T C C T G A T A G C A G C T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:RCCACYAGGKGGCACY---
--NNNAAGGGGGCGGGNNN
 C T A G T A G C A G T C G T C A T A G C G A C T C G T A A C T G C T A G C A G T A C T G A C T G A G T C C T G A T A G C A G C T A C G T A C G T A C G T
A C G T A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

Znf423/MA0116.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--RCCACYAGGKGGCACY
GCACCCCTGGGTGCC---
 A C G T A C G T C T A G T A G C A G T C G T C A T A G C G A C T C G T A A C T G C T A G C A G T A C T G A C T G A G T C C T G A T A G C A G C T
A C T G T G A C G T C A G T A C A G T C A G T C G A T C C G A T C T A G A C T G A C T G A C G T A C T G A T G C A G T C A C G T A C G T A C G T