Information for 13-TCTGCACGTW (Motif 30)

A C G T A T G C C G A T A C T G A G T C C G T A A G T C A T C G A C G T C G T A
Reverse Opposite:
C G A T C G T A A T G C A C T G A C G T A C T G G T A C C G T A A T C G C G T A
p-value:1e-4
log p-value:-1.128e+01
Information Content per bp:1.882
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.75%
Number of Background Sequences with motif172.3
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets49.4 +/- 30.1bp
Average Position of motif in Background51.0 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:1
Score:0.78
Offset:3
Orientation:reverse strand
Alignment:TCTGCACGTW-
---GCACGTAY
 A C G T A T G C C G A T A C T G A G T C C G T A A G T C A T C G A C G T C G T A A C G T
A C G T A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:2
Score:0.78
Offset:3
Orientation:forward strand
Alignment:TCTGCACGTW---
---GCACGTACCC
 A C G T A T G C C G A T A C T G A G T C C G T A A G T C A T C G A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:TCTGCACGTW
--BGCACGTA
 A C G T A T G C C G A T A C T G A G T C C G T A A G T C A T C G A C G T C G T A
A C G T A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:4
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:TCTGCACGTW-
---GCACGTNC
 A C G T A T G C C G A T A C T G A G T C C G T A A G T C A T C G A C G T C G T A A C G T
A C G T A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

Arnt/MA0004.1/Jaspar

Match Rank:5
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:TCTGCACGTW
----CACGTG
 A C G T A T G C C G A T A C T G A G T C C G T A A G T C A T C G A C G T C G T A
A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C T G A G C T A C T G

PB0104.1_Zscan4_1/Jaspar

Match Rank:6
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----TCTGCACGTW---
TACATGTGCACATAAAA
 A C G T A C G T A C G T A C G T A C G T A T G C C G A T A C T G A G T C C G T A A G T C A T C G A C G T C G T A A C G T A C G T A C G T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

MNT/MA0825.1/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TCTGCACGTW--
--NGCACGTGNT
 A C G T A T G C C G A T A C T G A G T C C G T A A G T C A T C G A C G T C G T A A C G T A C G T
A C G T A C G T C T A G A C T G G T A C G T C A A G T C T C A G C G A T C A T G A T C G G A C T

Mlxip/MA0622.1/Jaspar

Match Rank:8
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TCTGCACGTW-
---GCACGTGT
 A C G T A T G C C G A T A C T G A G T C C G T A A G T C A T C G A C G T C G T A A C G T
A C G T A C G T A C G T A C T G A G T C C G T A A G T C A C T G A C G T A C T G C A G T

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TCTGCACGTW---
---KCACGTGMCN
 A C G T A T G C C G A T A C T G A G T C C G T A A G T C A T C G A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C A T G G T A C C G T A A G T C C T A G A C G T A C T G G T A C A G T C A G C T

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:TCTGCACGTW--
----CACGTGBN
 A C G T A T G C C G A T A C T G A G T C C G T A A G T C A T C G A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T G T A C C T G A A G T C C T A G G C A T C A T G A C G T G C T A