Information for 15-TGRGCAAGAATAA (Motif 28)

C G A T A C T G C T G A T A C G A G T C C G T A C G T A A C T G C T G A C G T A C G A T C T G A G C T A
Reverse Opposite:
C A G T A G C T G C T A A C G T A G C T G T A C A C G T C G A T C T A G A T G C A G C T A G T C C G T A
p-value:1e-6
log p-value:-1.508e+01
Information Content per bp:1.760
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif42.0
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets52.9 +/- 33.7bp
Average Position of motif in Background40.0 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0172.1_Sox1_2/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TGRGCAAGAATAA---
-NNNTAACAATTATAN
 C G A T A C T G C T G A T A C G A G T C C G T A C G T A A C T G C T G A C G T A C G A T C T G A G C T A A C G T A C G T A C G T
A C G T A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G

Sox5/MA0087.1/Jaspar

Match Rank:2
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:TGRGCAAGAATAA
----NAACAAT--
 C G A T A C T G C T G A T A C G A G T C C G T A C G T A A C T G C T G A C G T A C G A T C T G A G C T A
A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:3
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:TGRGCAAGAATAA
-----AACAAT--
 C G A T A C T G C T G A T A C G A G T C C G T A C G T A A C T G C T G A C G T A C G A T C T G A G C T A
A C G T A C G T A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:4
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TGRGCAAGAATAA
---CCAATAAAAA
 C G A T A C T G C T G A T A C G A G T C C G T A C G T A A C T G C T G A C G T A C G A T C T G A G C T A
A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

CDX2/MA0465.1/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TGRGCAAGAATAA
-AAGCCATAAAA-
 C G A T A C T G C T G A T A C G A G T C C G T A C G T A A C T G C T G A C G T A C G A T C T G A G C T A
A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

PB0065.1_Sox15_1/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TGRGCAAGAATAA----
TAGTGAACAATAGATTT
 C G A T A C T G C T G A T A C G A G T C C G T A C G T A A C T G C T G A C G T A C G A T C T G A G C T A A C G T A C G T A C G T A C G T
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TGRGCAAGAATAA
---CCAATAAAAC
 C G A T A C T G C T G A T A C G A G T C C G T A C G T A A C T G C T G A C G T A C G A T C T G A G C T A
A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TGRGCAAGAATAA
---CCAATAAAAA
 C G A T A C T G C T G A T A C G A G T C C G T A C G T A A C T G C T G A C G T A C G A T C T G A G C T A
A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

PB0062.1_Sox12_1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TGRGCAAGAATAA
NTTNAGAACAATTA
 A C G T C G A T A C T G C T G A T A C G A G T C C G T A C G T A A C T G C T G A C G T A C G A T C T G A G C T A
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A

PB0063.1_Sox13_1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TGRGCAAGAATAA---
TTAAGAACAATAAATT
 C G A T A C T G C T G A T A C G A G T C C G T A C G T A A C T G C T G A C G T A C G A T C T G A G C T A A C G T A C G T A C G T
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T