Information for 7-TCTGCATGCA (Motif 27)

A G C T A T G C A C G T T C A G T A G C G C T A C A G T A C T G A T G C G T C A
Reverse Opposite:
A C G T T A C G G T A C G T C A C G A T A T C G A G T C C G T A T A C G C T G A
p-value:1e-5
log p-value:-1.271e+01
Information Content per bp:1.823
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.94%
Number of Background Sequences with motif175.0
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets37.6 +/- 26.6bp
Average Position of motif in Background48.1 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TCTGCATGCA----
ATTTGCATACAATGG
 A C G T A G C T A T G C A C G T T C A G T A G C G C T A C A G T A C T G A T G C G T C A A C G T A C G T A C G T A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

POU2F2/MA0507.1/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TCTGCATGCA
TTCATTTGCATAT-
 A C G T A C G T A C G T A C G T A G C T A T G C A C G T T C A G T A G C G C T A C A G T A C T G A T G C G T C A
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:3
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TCTGCATGCA-
TNTAATTTGCATACNA
 A C G T A C G T A C G T A C G T A C G T A G C T A T G C A C G T T C A G T A G C G C T A C A G T A C T G A T G C G T C A A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TCTGCATGCA-
TNTAATTTGCATACNA
 A C G T A C G T A C G T A C G T A C G T A G C T A T G C A C G T T C A G T A G C G C T A C A G T A C T G A T G C G T C A A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TCTGCATGCA
DCTCAGCAGG--
 A C G T A C G T A G C T A T G C A C G T T C A G T A G C G C T A C A G T A C T G A T G C G T C A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TCTGCATGCA
BTVATTWGCATA--
 A C G T A C G T A C G T A C G T A G C T A T G C A C G T T C A G T A G C G C T A C A G T A C T G A T G C G T C A
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TCTGCATGCA-
-TBGCACGCAA
 A G C T A T G C A C G T T C A G T A G C G C T A C A G T A C T G A T G C G T C A A C G T
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

PH0144.1_Pou2f2/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TCTGCATGCA-
TNTAATTTGCATANNN
 A C G T A C G T A C G T A C G T A C G T A G C T A T G C A C G T T C A G T A G C G C T A C A G T A C T G A T G C G T C A A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TCTGCATGCA
ATTTGCATAA-
 A C G T A G C T A T G C A C G T T C A G T A G C G C T A C A G T A C T G A T G C G T C A
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TCTGCATGCA
ATTTGCATA--
 A C G T A G C T A T G C A C G T T C A G T A G C G C T A C A G T A C T G A T G C G T C A
G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T A C G T