Information for 5-TCCWGSTTGCCAC (Motif 13)

A G C T T A G C G T A C G C T A C A T G T A G C A G C T C G A T A T C G G T A C A G T C T G C A A G T C
Reverse Opposite:
C T A G A C G T A C T G A C T G A T G C C G T A C T G A A T C G G A T C C G A T A C T G A T C G C T G A
p-value:1e-10
log p-value:-2.326e+01
Information Content per bp:1.686
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.59%
Number of Background Sequences with motif143.0
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets37.1 +/- 19.5bp
Average Position of motif in Background48.4 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:TCCWGSTTGCCAC
-----CTTGGCAA
 A G C T T A G C G T A C G C T A C A T G T A G C A G C T C G A T A T C G G T A C A G T C T G C A A G T C
A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.56
Offset:4
Orientation:forward strand
Alignment:TCCWGSTTGCCAC-
----HTTTCCCASG
 A G C T T A G C G T A C G C T A C A T G T A G C A G C T C G A T A T C G G T A C A G T C T G C A A G T C A C G T
A C G T A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.55
Offset:5
Orientation:forward strand
Alignment:TCCWGSTTGCCAC-
-----CGTGCCAAG
 A G C T T A G C G T A C G C T A C A T G T A G C A G C T C G A T A T C G G T A C A G T C T G C A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:TCCWGSTTGCCAC
-------TGCCAA
 A G C T T A G C G T A C G C T A C A T G T A G C A G C T C G A T A T C G G T A C A G T C T G C A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TCCWGSTTGCCAC-----
----GGTTGCCATGGCAA
 A G C T T A G C G T A C G C T A C A T G T A G C A G C T C G A T A T C G G T A C A G T C T G C A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TCCWGSTTGCCAC-----
----NGTTGCCATGGCAA
 A G C T T A G C G T A C G C T A C A T G T A G C A G C T C G A T A T C G G T A C A G T C T G C A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TCCWGSTTGCCAC---
NGTAGGTTGGCATNNN
 A G C T T A G C G T A C G C T A C A T G T A G C A G C T C G A T A T C G G T A C A G T C T G C A A G T C A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.54
Offset:6
Orientation:forward strand
Alignment:TCCWGSTTGCCAC--
------CTGCCCGCA
 A G C T T A G C G T A C G C T A C A T G T A G C A G C T C G A T A T C G G T A C A G T C T G C A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:9
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----TCCWGSTTGCCAC--
NTGACTCANTTTTTCCANTN
 A C G T A C G T A C G T A C G T A C G T A G C T T A G C G T A C G C T A C A T G T A G C A G C T C G A T A T C G G T A C A G T C T G C A A G T C A C G T A C G T
T C G A G C A T A C T G C G T A A T G C G C A T G T A C C G T A A G C T G C A T A G C T A G C T G A C T A G C T A G T C A G T C G C T A A G C T G A C T A T G C

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---TCCWGSTTGCCAC
ACATCCTGNT------
 A C G T A C G T A C G T A G C T T A G C G T A C G C T A C A T G T A G C A G C T C G A T A T C G G T A C A G T C T G C A A G T C
C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T A C G T A C G T A C G T A C G T A C G T A C G T