Information for 4-YAGRATATCCWCS (Motif 12)

A G T C C G T A A C T G C T A G C G T A A C G T C G T A A C G T A G T C A G T C G C T A A G T C A T G C
Reverse Opposite:
T A C G A C T G C G A T A C T G A C T G C G T A A C G T C G T A A C G T A G T C A G T C A C G T C T A G
p-value:1e-10
log p-value:-2.329e+01
Information Content per bp:1.874
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.8 +/- 24.7bp
Average Position of motif in Background35.2 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:YAGRATATCCWCS
-AAGATATCCTT-
 A G T C C G T A A C T G C T A G C G T A A C G T C G T A A C G T A G T C A G T C G C T A A G T C A T G C
A C G T G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T A C G T

PB0181.1_Spdef_2/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----YAGRATATCCWCS
CTACTAGGATGTNNTN-
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G C T A G C G T A A C G T C G T A A C G T A G T C A G T C G C T A A G T C A T G C
A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:3
Score:0.61
Offset:6
Orientation:forward strand
Alignment:YAGRATATCCWCS
------ATCCAC-
 A G T C C G T A A C T G C T A G C G T A A C G T C G T A A C G T A G T C A G T C G C T A A G T C A T G C
A C G T A C G T A C G T A C G T A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--YAGRATATCCWCS
NACAGGAAAT-----
 A C G T A C G T A G T C C G T A A C T G C T A G C G T A A C G T C G T A A C G T A G T C A G T C G C T A A G T C A T G C
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T A C G T

PH0166.1_Six6_2/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--YAGRATATCCWCS--
AATAGGGTATCAATATT
 A C G T A C G T A G T C C G T A A C T G C T A G C G T A A C G T C G T A A C G T A G T C A G T C G C T A A G T C A T G C A C G T A C G T
C T G A C G T A C G A T T C G A C T A G C A T G T C A G C A G T C T G A A C G T G A T C G C T A G C T A G A C T G C T A G A C T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:YAGRATATCCWCS
--GGAAATCCCC-
 A G T C C G T A A C T G C T A G C G T A A C G T C G T A A C G T A G T C A G T C G C T A A G T C A T G C
A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:YAGRATATCCWCS
--GHATATKCAT-
 A G T C C G T A A C T G C T A G C G T A A C G T C G T A A C G T A G T C A G T C G C T A A G T C A T G C
A C G T A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T

RELA/MA0107.1/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:YAGRATATCCWCS
GGGAATTTCC---
 A G T C C G T A A C T G C T A G C G T A A C G T C G T A A C G T A G T C A G T C G C T A A G T C A T G C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--YAGRATATCCWCS
ANCAGGATGT-----
 A C G T A C G T A G T C C G T A A C T G C T A G C G T A A C G T C G T A A C G T A G T C A G T C G C T A A G T C A T G C
C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T A C G T A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:YAGRATATCCWCS
--GGAAATTCCC-
 A G T C C G T A A C T G C T A G C G T A A C G T C G T A A C G T A G T C A G T C G C T A A G T C A T G C
A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T