Information for 1-TGTCAAGCTA (Motif 5)

A C G T A C T G C G A T A G T C C G T A C G T A C T A G A G T C C G A T C T G A
Reverse Opposite:
G A C T C G T A A C T G A G T C C G A T A C G T T C A G C G T A A G T C C G T A
p-value:1e-12
log p-value:-2.851e+01
Information Content per bp:1.824
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.92%
Number of Background Sequences with motif138.2
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets50.4 +/- 23.7bp
Average Position of motif in Background53.1 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS3/MA0775.1/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--TGTCAAGCTA
CCTGTCAA----
 A C G T A C G T A C G T A C T G C G A T A G T C C G T A C G T A C T A G A G T C C G A T C T G A
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:2
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TGTCAAGCTA
NTGTCAN----
 A C G T A C G T A C T G C G A T A G T C C G T A C G T A C T A G A G T C C G A T C T G A
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:3
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--TGTCAAGCTA
GCTGTCAA----
 A C G T A C G T A C G T A C T G C G A T A G T C C G T A C G T A C T A G A G T C C G A T C T G A
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:4
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TGTCAAGCTA
RHTGWCAR----
 A C G T A C G T A C G T A C T G C G A T A G T C C G T A C G T A C T A G A G T C C G A T C T G A
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:5
Score:0.67
Offset:3
Orientation:forward strand
Alignment:TGTCAAGCTA
---CAAGCTT
 A C G T A C T G C G A T A G T C C G T A C G T A C T A G A G T C C G A T C T G A
A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TGTCAAGCTA
ARNTGACA-----
 A C G T A C G T A C G T A C G T A C T G C G A T A G T C C G T A C G T A C T A G A G T C C G A T C T G A
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TGTCAAGCTA
VGCTGWCAVB---
 A C G T A C G T A C G T A C G T A C T G C G A T A G T C C G T A C G T A C T A G A G T C C G A T C T G A
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TGTCAAGCTA
TTGCCAAG---
 A C G T A C G T A C T G C G A T A G T C C G T A C G T A C T A G A G T C C G A T C T G A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:9
Score:0.65
Offset:-7
Orientation:reverse strand
Alignment:-------TGTCAAGCTA
NNNCAGCTGTCAATATN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G A T A G T C C G T A C G T A C T A G A G T C C G A T C T G A
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TGTCAAGCTA
NCTGTCAATCAN
 A C G T A C G T A C G T A C T G C G A T A G T C C G T A C G T A C T A G A G T C C G A T C T G A
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A