Information for 11-CCTGGCTARATTA (Motif 28)

A G T C G T A C C G A T A C T G A T C G T A G C A C G T C G T A C T A G C G T A G A C T A G C T C G T A
Reverse Opposite:
G C A T T C G A C T G A C G A T A G T C G A C T G T C A A C T G A T G C G T A C C G T A C A T G A C T G
p-value:1e-7
log p-value:-1.714e+01
Information Content per bp:1.714
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.79%
Number of Background Sequences with motif92.1
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets57.2 +/- 29.1bp
Average Position of motif in Background49.4 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0185.1_Tcf1_2/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCTGGCTARATTA--
-TTGCCCGGATTAGG
 A G T C G T A C C G A T A C T G A T C G T A G C A C G T C G T A C T A G C G T A G A C T A G C T C G T A A C G T A C G T
A C G T C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G

DUX4/MA0468.1/Jaspar

Match Rank:2
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CCTGGCTARATTA
--TGATTAAATTA
 A G T C G T A C C G A T A C T G A T C G T A G C A C G T C G T A C T A G C G T A G A C T A G C T C G T A
A C G T A C G T C G A T C T A G C G T A A C G T C A G T T C G A T C G A C T G A A C G T A G C T C G T A

SMAD3/MA0795.1/Jaspar

Match Rank:3
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CCTGGCTARATTA
--TGTCTAGACG-
 A G T C G T A C C G A T A C T G A T C G T A G C A C G T C G T A C T A G C G T A G A C T A G C T C G T A
A C G T A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T

PB0176.1_Sox5_2/Jaspar

Match Rank:4
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CCTGGCTARATTA-----
---NNCTNAATTATGANN
 A G T C G T A C C G A T A C T G A T C G T A G C A C G T C G T A C T A G C G T A G A C T A G C T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T G A T C A T G C A C G T G C A T C T G A C G T A C G A T A C G T G T C A G A C T T C A G G C T A C G A T G C T A

Hoxd3/MA0912.1/Jaspar

Match Rank:5
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CCTGGCTARATTA----
-TTGAGTTAATTAACCT
 A G T C G T A C C G A T A C T G A T C G T A G C A C G T C G T A C T A G C G T A G A C T A G C T C G T A A C G T A C G T A C G T A C G T
A C G T G A C T C G A T C A T G C T G A C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A T G C A G C T

PH0079.1_Hoxd3/Jaspar

Match Rank:6
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CCTGGCTARATTA----
-TTGAGTTAATTAACCT
 A G T C G T A C C G A T A C T G A T C G T A G C A C G T C G T A C T A G C G T A G A C T A G C T C G T A A C G T A C G T A C G T A C G T
A C G T G A C T C G A T C A T G C T G A C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A T G C A G C T

PH0175.1_Vax2/Jaspar

Match Rank:7
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:CCTGGCTARATTA------
---GNCTTAATTAGTGNNN
 A G T C G T A C C G A T A C T G A T C G T A G C A C G T C G T A C T A G C G T A G A C T A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T T G A C A G C T G A C T G T C A C G T A C G A T A C G T C T G A T C A G A G C T T A C G A G T C G C T A T G A C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:8
Score:0.52
Offset:6
Orientation:forward strand
Alignment:CCTGGCTARATTA-
------RGGATTAR
 A G T C G T A C C G A T A C T G A T C G T A G C A C G T C G T A C T A G C G T A G A C T A G C T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G

PH0159.1_Rhox6/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CCTGGCTARATTA------
--TGCCTTAATTAATGCTC
 A G T C G T A C C G A T A C T G A T C G T A G C A C G T C G T A C T A G C G T A G A C T A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T T C A G G T A C T G A C G A C T G A C T G C T A T C G A A C G T C G A T C G T A C T G A A G C T A C T G A T G C C G A T G A T C

DUXA/MA0884.1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CCTGGCTARATTA-
-NTGATTAAATTAN
 A G T C G T A C C G A T A C T G A T C G T A G C A C G T C G T A C T A G C G T A G A C T A G C T C G T A A C G T
A C G T G A C T G C A T T C A G T G C A A G C T A C G T T C G A T C G A C T G A A G C T G A C T C T G A C T A G