Information for 1-CTGYCASTCAVRBBSM (Motif 1)

A T G C A G C T A C T G A G C T T A G C C G T A T A C G A C G T A T G C G T C A T G C A T C A G A T G C A G T C T A C G T G A C
Reverse Opposite:
A C T G A T G C T C A G T A C G A G T C A C G T C A G T A T C G C G T A A T G C G C A T A T C G C T G A A G T C C T G A T A C G
p-value:1e-43
log p-value:-1.007e+02
Information Content per bp:1.609
Number of Target Sequences with motif73.0
Percentage of Target Sequences with motif10.28%
Number of Background Sequences with motif533.0
Percentage of Background Sequences with motif1.16%
Average Position of motif in Targets52.9 +/- 22.2bp
Average Position of motif in Background50.9 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-CTGYCASTCAVRBBSM
NCTGTCAATCAN-----
 A C G T A T G C A G C T A C T G A G C T T A G C C G T A T A C G A C G T A T G C G T C A T G C A T C A G A T G C A G T C T A C G T G A C
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-CTGYCASTCAVRBBSM
SCTGTCAVTCAV-----
 A C G T A T G C A G C T A C T G A G C T T A G C C G T A T A C G A C G T A T G C G T C A T G C A T C A G A T G C A G T C T A C G T G A C
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--CTGYCASTCAVRBBSM
GSCTGTCACTCA------
 A C G T A C G T A T G C A G C T A C T G A G C T T A G C C G T A T A C G A C G T A T G C G T C A T G C A T C A G A T G C A G T C T A C G T G A C
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:4
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CTGYCASTCAVRBBSM
VGCTGWCAVB--------
 A C G T A C G T A T G C A G C T A C T G A G C T T A G C C G T A T A C G A C G T A T G C G T C A T G C A T C A G A T G C A G T C T A C G T G A C
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CTGYCASTCAVRBBSM
GCTGTCAA---------
 A C G T A T G C A G C T A C T G A G C T T A G C C G T A T A C G A C G T A T G C G T C A T G C A T C A G A T G C A G T C T A C G T G A C
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:6
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------CTGYCASTCAVRBBSM
AAGCACCTGTCAATAT------
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C T G A G C T T A G C C G T A T A C G A C G T A T G C G T C A T G C A T C A G A T G C A G T C T A C G T G A C
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:7
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CTGYCASTCAVRBBSM
CCTGTCAA---------
 A C G T A T G C A G C T A C T G A G C T T A G C C G T A T A C G A C G T A T G C G T C A T G C A T C A G A T G C A G T C T A C G T G A C
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:8
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------CTGYCASTCAVRBBSM
NNNCAGCTGTCAATATN-----
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C T G A G C T T A G C C G T A T A C G A C G T A T G C G T C A T G C A T C A G A T G C A G T C T A C G T G A C
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C A C G T A C G T A C G T A C G T A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:9
Score:0.69
Offset:-6
Orientation:forward strand
Alignment:------CTGYCASTCAVRBBSM
AAAGACCTGTCAATCC------
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C T G A G C T T A G C C G T A T A C G A C G T A T G C G T C A T G C A T C A G A T G C A G T C T A C G T G A C
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C A C G T A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CTGYCASTCAVRBBSM
NTGTCAN---------
 A T G C A G C T A C T G A G C T T A G C C G T A T A C G A C G T A T G C G T C A T G C A T C A G A T G C A G T C T A C G T G A C
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T