Information for 3-GAAWSAAWAWSSAWTT (Motif 9)

A C T G C G T A C G T A C G A T A T C G C G T A C G T A C G A T G T C A G C T A T A C G A T G C C G T A C G T A C G A T C G A T
Reverse Opposite:
C G T A C G T A C G A T A C G T A T C G A T G C C G A T A C G T C G T A A C G T A C G T A T G C C G T A A C G T A C G T A G T C
p-value:1e-11
log p-value:-2.623e+01
Information Content per bp:1.827
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.4 +/- 24.2bp
Average Position of motif in Background72.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0005.1_Barhl1/Jaspar

Match Rank:1
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GAAWSAAWAWSSAWTT-----
-----AACAACCAATTAATTC
 A C T G C G T A C G T A C G A T A T C G C G T A C G T A C G A T G T C A G C T A T A C G A T G C C G T A C G T A C G A T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C

PB0093.1_Zfp105_1/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GAAWSAAWAWSSAWTT
AACAAACAACAAGAG---
 A C G T A C G T A C T G C G T A C G T A C G A T A T C G C G T A C G T A C G A T G T C A G C T A T A C G A T G C C G T A C G T A C G A T C G A T
G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G A C G T A C G T A C G T

PH0006.1_Barhl2/Jaspar

Match Rank:3
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GAAWSAAWAWSSAWTT-----
-----AAAAACCAATTAAGAA
 A C T G C G T A C G T A C G A T A T C G C G T A C G T A C G A T G T C A G C T A T A C G A T G C C G T A C G T A C G A T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:4
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GAAWSAAWAWSSAWTT
TACTGGAAAAAAAA-------
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G A T A T C G C G T A C G T A C G A T G T C A G C T A T A C G A T G C C G T A C G T A C G A T C G A T
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:5
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GAAWSAAWAWSSAWTT
ACTATGAATGAATGAT-----
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G A T A T C G C G T A C G T A C G A T G T C A G C T A T A C G A T G C C G T A C G T A C G A T C G A T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T A C G T A C G T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GAAWSAAWAWSSAWTT-
--ATGAATATTCATGAG
 A C T G C G T A C G T A C G A T A T C G C G T A C G T A C G A T G T C A G C T A T A C G A T G C C G T A C G T A C G A T C G A T A C G T
A C G T A C G T G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

PH0108.1_Msx3/Jaspar

Match Rank:7
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GAAWSAAWAWSSAWTT-----
-----CAAAACCAATTAATTT
 A C T G C G T A C G T A C G A T A T C G C G T A C G T A C G A T G T C A G C T A T A C G A T G C C G T A C G T A C G A T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C T C G A G T C A C T G A T C G A A T G C A G T C C T G A G T C A C G A T G A C T C G T A C T G A A C G T G A C T G C A T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GAAWSAAWAWSSAWTT
--ATGAATATTC----
 A C T G C G T A C G T A C G A T A T C G C G T A C G T A C G A T G T C A G C T A T A C G A T G C C G T A C G T A C G A T C G A T
A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GAAWSAAWAWSSAWTT
--ATGMATATDC----
 A C T G C G T A C G T A C G A T A T C G C G T A C G T A C G A T G T C A G C T A T A C G A T G C C G T A C G T A C G A T C G A T
A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T A C G T

ONECUT1/MA0679.1/Jaspar

Match Rank:10
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GAAWSAAWAWSSAWTT---
-----ANTATCGATTTTTN
 A C T G C G T A C G T A C G A T A T C G C G T A C G T A C G A T G T C A G C T A T A C G A T G C C G T A C G T A C G A T C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C G A T G C A T C T G A C G A T G A T C C T A G T G C A A G C T G A C T C G A T G C A T G A C T A C G T