Information for 3-GGBAGCABCTCCTTGG (Motif 3)

A T C G A C T G A T C G C T G A A T C G A G T C G T C A A C T G T G A C C A G T A G T C A G T C C G A T A C G T A C T G A C T G
Reverse Opposite:
G T A C G T A C G T C A C G T A C T A G A C T G G T C A A C T G T G A C A C G T A C T G A T G C A G C T T A G C A G T C A T G C
p-value:1e-12
log p-value:-2.834e+01
Information Content per bp:1.785
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.2 +/- 26.1bp
Average Position of motif in Background54.4 +/- 8.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GGBAGCABCTCCTTGG
ADGGYAGYAGCATCT---
 A C G T A C G T A T C G A C T G A T C G C T G A A T C G A G T C G T C A A C T G T G A C C A G T A G T C A G T C C G A T A C G T A C T G A C T G
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T A C G T A C G T A C G T

EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGBAGCABCTCCTTGG----
GGYAGCAYDTGCTDCCCNNN
 A T C G A C T G A T C G C T G A A T C G A G T C G T C A A C T G T G A C C A G T A G T C A G T C C G A T A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C T G C T A G G A T C C G T A C T A G A G T C T G C A G A C T C G T A A C G T T C A G A G T C A C G T C T G A A G T C A G T C G A T C C G T A T C A G T A C G

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:3
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GGBAGCABCTCCTTGG
---ACCACATCCTGT-
 A T C G A C T G A T C G C T G A A T C G A G T C G T C A A C T G T G A C C A G T A G T C A G T C C G A T A C G T A C T G A C T G
A C G T A C G T A C G T T G C A A G T C A G T C C G T A A G T C C G T A A C G T A G T C A G T C C A G T A T C G A G C T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GGBAGCABCTCCTTGG
GGGAGGACNG------
 A T C G A C T G A T C G C T G A A T C G A G T C G T C A A C T G T G A C C A G T A G T C A G T C C G A T A C G T A C T G A C T G
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:5
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GGBAGCABCTCCTTGG
CGGAGC----------
 A T C G A C T G A T C G C T G A A T C G A G T C G T C A A C T G T G A C C A G T A G T C A G T C C G A T A C G T A C T G A C T G
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:GGBAGCABCTCCTTGG
-----BNTGDCCTTG-
 A T C G A C T G A T C G C T G A A T C G A G T C G T C A A C T G T G A C C A G T A G T C A G T C C G A T A C G T A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T

PB0154.1_Osr1_2/Jaspar

Match Rank:7
Score:0.51
Offset:-6
Orientation:reverse strand
Alignment:------GGBAGCABCTCCTTGG
NNNTTAGGTAGCNTNT------
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C T G A T C G C T G A A T C G A G T C G T C A A C T G T G A C C A G T A G T C A G T C C G A T A C G T A C T G A C T G
A C T G C A G T G C T A C A G T A G C T C G T A C T A G A C T G C G A T C T G A C T A G A G T C C T G A C G A T C T A G G A C T A C G T A C G T A C G T A C G T A C G T A C G T

PB0181.1_Spdef_2/Jaspar

Match Rank:8
Score:0.50
Offset:2
Orientation:forward strand
Alignment:GGBAGCABCTCCTTGG--
--GATAACATCCTAGTAG
 A T C G A C T G A T C G C T G A A T C G A G T C G T C A A C T G T G A C C A G T A G T C A G T C C G A T A C G T A C T G A C T G A C G T A C G T
A C G T A C G T C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-GGBAGCABCTCCTTGG
AGGAAACAGCTG-----
 A C G T A T C G A C T G A T C G C T G A A T C G A G T C G T C A A C T G T G A C C A G T A G T C A G T C C G A T A C G T A C T G A C T G
T C G A A C T G A C T G C G T A C G T A T C G A A G T C C T G A A T C G G T A C G C A T C A T G A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:GGBAGCABCTCCTTGG-
-------TGACCTTGAN
 A T C G A C T G A T C G C T G A A T C G A G T C G T C A A C T G T G A C C A G T A G T C A G T C C G A T A C G T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A