Information for 2-RAGCMCACAGARATGG (Motif 2)

C T A G C G T A T C A G A G T C G T A C A G T C G T C A A G T C C G T A A C T G C G T A T C A G G T C A A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C G T A G C T A C G T A G T C G A C T A C T G A C G T A C T G A C T G A C T G A G T C A C G T A G T C
p-value:1e-12
log p-value:-2.909e+01
Information Content per bp:1.795
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.9 +/- 21.3bp
Average Position of motif in Background41.3 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1/MA0002.2/Jaspar

Match Rank:1
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:RAGCMCACAGARATGG
-AAACCACAGAN----
 C T A G C G T A T C A G A G T C G T A C A G T C G T C A A G T C C G T A A C T G C G T A T C A G G T C A A C G T A C T G A C T G
A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:RAGCMCACAGARATGG
-----CACAGN-----
 C T A G C G T A T C A G A G T C G T A C A G T C G T C A A G T C C G T A A C T G C G T A T C A G G T C A A C G T A C T G A C T G
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:RAGCMCACAGARATGG
-CRCCCACGCA-----
 C T A G C G T A T C A G A G T C G T A C A G T C G T C A A G T C C G T A A C T G C G T A T C A G G T C A A C G T A C T G A C T G
A C G T G A T C C T G A A G T C T G A C A G T C G T C A A G T C C T A G A G T C G T C A A C G T A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:4
Score:0.51
Offset:0
Orientation:forward strand
Alignment:RAGCMCACAGARATGG
NWAACCACADNN----
 C T A G C G T A T C A G A G T C G T A C A G T C G T C A A G T C C G T A A C T G C G T A T C A G G T C A A C G T A C T G A C T G
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:5
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:RAGCMCACAGARATGG
-CGCCCCCTGACA---
 C T A G C G T A T C A G A G T C G T A C A G T C G T C A A G T C C G T A A C T G C G T A T C A G G T C A A C G T A C T G A C T G
A C G T G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T A C G T A C G T

Sox11/MA0869.1/Jaspar

Match Rank:6
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:RAGCMCACAGARATGG--
---AACACTGAAATTGTT
 C T A G C G T A T C A G A G T C G T A C A G T C G T C A A G T C C G T A A C T G C G T A T C A G G T C A A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T T C G A C G T A A G T C G T C A G T A C A C G T C T A G G T C A C T G A C G T A A C G T A C G T A C T G A C G T A C G T

MF0008.1_MADS_class/Jaspar

Match Rank:7
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:RAGCMCACAGARATGG
------CCATATATGG
 C T A G C G T A T C A G A G T C G T A C A G T C G T C A A G T C C G T A A C T G C G T A T C A G G T C A A C G T A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:RAGCMCACAGARATGG
-AAACCACAGC-----
 C T A G C G T A T C A G A G T C G T A C A G T C G T C A A G T C C G T A A C T G C G T A T C A G G T C A A C G T A C T G A C T G
A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T A C G T A C G T

PB0092.1_Zbtb7b_1/Jaspar

Match Rank:9
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-RAGCMCACAGARATGG
AAGCCCCCCAAAAAT--
 A C G T C T A G C G T A T C A G A G T C G T A C A G T C G T C A A G T C C G T A A C T G C G T A T C A G G T C A A C G T A C T G A C T G
C T G A C T G A T C A G T A G C T A G C G T A C G T A C A G T C G A T C G C T A G C T A G C T A C G T A G T C A A G C T A C G T A C G T

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:10
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-RAGCMCACAGARATGG
YCCGCCCACGCN-----
 A C G T C T A G C G T A T C A G A G T C G T A C A G T C G T C A A G T C C G T A A C T G C G T A T C A G G T C A A C G T A C T G A C T G
G A T C G T A C G A T C C T A G A G T C A G T C A G T C G T C A A G T C C T A G A T G C T C G A A C G T A C G T A C G T A C G T A C G T