Information for 9-CAAGCYGAKGGCY (Motif 17)

A G T C C G T A G T C A A C T G G A T C G A T C A C T G C G T A C A G T A C T G A C T G A G T C A G C T
Reverse Opposite:
T C G A A C T G A G T C A G T C G T C A A C G T A G T C C T A G C A T G A G T C C A G T A C G T A C T G
p-value:1e-9
log p-value:-2.182e+01
Information Content per bp:1.797
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif19.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets49.6 +/- 26.6bp
Average Position of motif in Background48.8 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAAGCYGAKGGCY
CAAGATGGCGGC-
 A G T C C G T A G T C A A C T G G A T C G A T C A C T G C G T A C A G T A C T G A C T G A G T C A G C T
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CAAGCYGAKGGCY
--AACAGATGGC-
 A G T C C G T A G T C A A C T G G A T C G A T C A C T G C G T A C A G T A C T G A C T G A G T C A G C T
A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CAAGCYGAKGGCY
---GTTAATGGCC
 A G T C C G T A G T C A A C T G G A T C G A T C A C T G C G T A C A G T A C T G A C T G A G T C A G C T
A C G T A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CAAGCYGAKGGCY------
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C C G T A G T C A A C T G G A T C G A T C A C T G C G T A C A G T A C T G A C T G A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CAAGCYGAKGGCY---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A G T C C G T A G T C A A C T G G A T C G A T C A C T G C G T A C A G T A C T G A C T G A G T C A G C T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CAAGCYGAKGGCY----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C C G T A G T C A A C T G G A T C G A T C A C T G C G T A C A G T A C T G A C T G A G T C A G C T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CAAGCYGAKGGCY
--NGCCTGAGGCN
 A G T C C G T A G T C A A C T G G A T C G A T C A C T G C G T A C A G T A C T G A C T G A G T C A G C T
A C G T A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CAAGCYGAKGGCY
--NGCCTNAGGCN
 A G T C C G T A G T C A A C T G G A T C G A T C A C T G C G T A C A G T A C T G A C T G A G T C A G C T
A C G T A C G T G C A T A T C G A T G C A G T C A G C T A T C G T C G A T C A G A T C G A T G C C A G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CAAGCYGAKGGCY
--AACAGATGGT-
 A G T C C G T A G T C A A C T G G A T C G A T C A C T G C G T A C A G T A C T G A C T G A G T C A G C T
A C G T A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CAAGCYGAKGGCY
CCTGCTGAGH---
 A G T C C G T A G T C A A C T G G A T C G A T C A C T G C G T A C A G T A C T G A C T G A G T C A G C T
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T