Information for 1-CAAGGGAACA (Motif 14)

G T A C G T C A G T C A C T A G A C T G A T C G G T C A C T G A G T A C C G T A
Reverse Opposite:
A C G T A C T G A G C T A C G T A T G C A G T C A G T C C A G T A C G T A C T G
p-value:1e-10
log p-value:-2.449e+01
Information Content per bp:1.852
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.44%
Number of Background Sequences with motif122.2
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets45.5 +/- 23.9bp
Average Position of motif in Background52.1 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CAAGGGAACA
CAAGGHCANV
 G T A C G T C A G T C A C T A G A C T G A T C G G T C A C T G A G T A C C G T A
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CAAGGGAACA-
-CCAGGAACAG
 G T A C G T C A G T C A C T A G A C T G A T C G G T C A C T G A G T A C C G T A A C G T
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CAAGGGAACA---
---TGGAACAGMA
 G T A C G T C A G T C A C T A G A C T G A T C G G T C A C T G A G T A C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CAAGGGAACA
BTCAAGGTCA--
 A C G T A C G T G T A C G T C A G T C A C T A G A C T G A T C G G T C A C T G A G T A C C G T A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CAAGGGAACA
NTCAAGGTCA--
 A C G T A C G T G T A C G T C A G T C A C T A G A C T G A T C G G T C A C T G A G T A C C G T A
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CAAGGGAACA
TCAAGGTCAN-
 A C G T G T A C G T C A G T C A C T A G A C T G A T C G G T C A C T G A G T A C C G T A
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CAAGGGAACA
TTGCCATGGCAACN
 A C G T A C G T A C G T A C G T G T A C G T C A G T C A C T A G A C T G A T C G G T C A C T G A G T A C C G T A
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CAAGGGAACA
CSTGGGAAAD
 G T A C G T C A G T C A C T A G A C T G A T C G G T C A C T G A G T A C C G T A
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CAAGGGAACA
TTGCCATGGCAACC
 A C G T A C G T A C G T A C G T G T A C G T C A G T C A C T A G A C T G A T C G G T C A C T G A G T A C C G T A
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CAAGGGAACA-
SCCTAGCAACAG
 A C G T G T A C G T C A G T C A C T A G A C T G A T C G G T C A C T G A G T A C C G T A A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G