Information for 4-GVAGAGATCAYAATGG (Motif 9)

A C T G T A C G C T G A A C T G C T G A A T C G C G T A C A G T A T G C C T G A A G T C C G T A T G C A C A G T T A C G A C T G
Reverse Opposite:
A G T C A T G C G T C A A C G T C G A T C T A G A G C T A T C G G T C A G C A T A T G C A G C T T A G C A G C T A G T C G T A C
p-value:1e-14
log p-value:-3.226e+01
Information Content per bp:1.717
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.2 +/- 22.3bp
Average Position of motif in Background47.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.63
Offset:8
Orientation:reverse strand
Alignment:GVAGAGATCAYAATGG
--------AACAAAGG
 A C T G T A C G C T G A A C T G C T G A A T C G C G T A C A G T A T G C C T G A A G T C C G T A T G C A C A G T T A C G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

PB0132.1_Hbp1_2/Jaspar

Match Rank:2
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GVAGAGATCAYAATGG-----
----NNTNNACAATGGGANNN
 A C T G T A C G C T G A A C T G C T G A A T C G C G T A C A G T A T G C C T G A A G T C C G T A T G C A C A G T T A C G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.59
Offset:8
Orientation:reverse strand
Alignment:GVAGAGATCAYAATGG
--------RACAAWGG
 A C T G T A C G C T G A A C T G C T G A A T C G C G T A C A G T A T G C C T G A A G T C C G T A T G C A C A G T T A C G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:GVAGAGATCAYAATGG
------VRAACAATGG
 A C T G T A C G C T G A A C T G C T G A A T C G C G T A C A G T A T G C C T G A A G T C C G T A T G C A C A G T T A C G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GVAGAGATCAYAATGG
------VRRACAAWGG
 A C T G T A C G C T G A A C T G C T G A A T C G C G T A C A G T A T G C C T G A A G T C C G T A T G C A C A G T T A C G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:GVAGAGATCAYAATGG-
-------GAACAATGGN
 A C T G T A C G C T G A A C T G C T G A A T C G C G T A C A G T A T G C C T G A A G T C C G T A T G C A C A G T T A C G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GVAGAGATCAYAATGG
------RNAACAATGG
 A C T G T A C G C T G A A C T G C T G A A T C G C G T A C A G T A T G C C T G A A G T C C G T A T G C A C A G T T A C G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GVAGAGATCAYAATGG
------AAAACAATGG
 A C T G T A C G C T G A A C T G C T G A A T C G C G T A C A G T A T G C C T G A A G T C C G T A T G C A C A G T T A C G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.55
Offset:7
Orientation:forward strand
Alignment:GVAGAGATCAYAATGG-
-------RAACAATGGN
 A C T G T A C G C T G A A C T G C T G A A T C G C G T A C A G T A T G C C T G A A G T C C G T A T G C A C A G T T A C G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.55
Offset:9
Orientation:reverse strand
Alignment:GVAGAGATCAYAATGG
---------ACAAAG-
 A C T G T A C G C T G A A C T G C T G A A T C G C G T A C A G T A T G C C T G A A G T C C G T A T G C A C A G T T A C G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T