Information for 3-AMYRTRTATGCAW (Motif 6)

C G T A G T A C A G C T C T G A A C G T T C A G A C G T C G T A A C G T A C T G A G T C C G T A C G A T
Reverse Opposite:
G C A T A C G T A C T G A G T C C G T A A C G T C G T A A G T C C G T A A G C T C T G A C A T G A C G T
p-value:1e-14
log p-value:-3.226e+01
Information Content per bp:1.847
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.0 +/- 27.3bp
Average Position of motif in Background37.7 +/- 5.4bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:AMYRTRTATGCAW
---GHATATKCAT
 C G T A G T A C A G C T C T G A A C G T T C A G A C G T C G T A A C G T A C T G A G T C C G T A C G A T
A C G T A C G T A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.67
Offset:5
Orientation:forward strand
Alignment:AMYRTRTATGCAW--
-----ATATGCAAAT
 C G T A G T A C A G C T C T G A A C G T T C A G A C G T C G T A A C G T A C T G A G T C C G T A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

PH0148.1_Pou3f3/Jaspar

Match Rank:3
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AMYRTRTATGCAW------
--AAAATATGCATAATAAA
 C G T A G T A C A G C T C T G A A C G T T C A G A C G T C G T A A C G T A C T G A G T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

Pou2f3/MA0627.1/Jaspar

Match Rank:4
Score:0.65
Offset:3
Orientation:forward strand
Alignment:AMYRTRTATGCAW------
---TTGTATGCAAATTAGA
 C G T A G T A C A G C T C T G A A C G T T C A G A C G T C G T A A C G T A C T G A G T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:5
Score:0.65
Offset:3
Orientation:forward strand
Alignment:AMYRTRTATGCAW------
---TTGTATGCAAATTAGA
 C G T A G T A C A G C T C T G A A C G T T C A G A C G T C G T A A C G T A C T G A G T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

POU2F2/MA0507.1/Jaspar

Match Rank:6
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:AMYRTRTATGCAW-----
-----ATATGCAAATNNN
 C G T A G T A C A G C T C T G A A C G T T C A G A C G T C G T A A C G T A C T G A G T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AMYRTRTATGCAW-
AYATGYATATGCATR
 A C G T C G T A G T A C A G C T C T G A A C G T T C A G A C G T C G T A A C G T A C T G A G T C C G T A C G A T A C G T
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:AMYRTRTATGCAW--
-----TTATGCAAAT
 C G T A G T A C A G C T C T G A A C G T T C A G A C G T C G T A A C G T A C T G A G T C C G T A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

PH0144.1_Pou2f2/Jaspar

Match Rank:9
Score:0.64
Offset:3
Orientation:forward strand
Alignment:AMYRTRTATGCAW------
---TTGTATGCAAATTAGA
 C G T A G T A C A G C T C T G A A C G T T C A G A C G T C G T A A C G T A C T G A G T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

POU3F4/MA0789.1/Jaspar

Match Rank:10
Score:0.64
Offset:6
Orientation:forward strand
Alignment:AMYRTRTATGCAW--
------TATGCAAAT
 C G T A G T A C A G C T C T G A A C G T T C A G A C G T C G T A A C G T A C T G A G T C C G T A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T