Information for 2-GTGCACATGCATG (Motif 4)

T A C G A C G T T C A G G A T C T G C A A T G C C G T A A C G T C T A G A T G C G T C A A C G T A T C G
Reverse Opposite:
T A G C C G T A A C G T A T C G G A T C T G C A G A C T A T C G A C G T C T A G A G T C T G C A A T G C
p-value:1e-14
log p-value:-3.432e+01
Information Content per bp:1.747
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif3.96%
Number of Background Sequences with motif152.7
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets44.4 +/- 23.5bp
Average Position of motif in Background47.7 +/- 49.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GTGCACATGCATG
AYATGYATATGCATR
 A C G T A C G T T A C G A C G T T C A G G A T C T G C A A T G C C G T A A C G T C T A G A T G C G T C A A C G T A T C G
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G

PB0026.1_Gm397_1/Jaspar

Match Rank:2
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GTGCACATGCATG
CAGATGTGCACATACGT-
 A C G T A C G T A C G T A C G T A C G T T A C G A C G T T C A G G A T C T G C A A T G C C G T A A C G T C T A G A T G C G T C A A C G T A T C G
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GTGCACATGCATG----
GACCACATTCATACAAT
 T A C G A C G T T C A G G A T C T G C A A T G C C G T A A C G T C T A G A T G C G T C A A C G T A T C G A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GTGCACATGCATG
--GHATATKCAT-
 T A C G A C G T T C A G G A T C T G C A A T G C C G T A A C G T C T A G A T G C G T C A A C G T A T C G
A C G T A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GTGCACATGCATG--
ATGAATATTCATGAG
 T A C G A C G T T C A G G A T C T G C A A T G C C G T A A C G T C T A G A T G C G T C A A C G T A T C G A C G T A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

PB0104.1_Zscan4_1/Jaspar

Match Rank:6
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----GTGCACATGCATG
TACATGTGCACATAAAA-
 A C G T A C G T A C G T A C G T A C G T T A C G A C G T T C A G G A T C T G C A A T G C C G T A A C G T C T A G A T G C G T C A A C G T A T C G
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:7
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GTGCACATGCATG-----
----ACATTCATGACACG
 T A C G A C G T T C A G G A T C T G C A A T G C C G T A A C G T C T A G A T G C G T C A A C G T A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GTGCACATGCATG-
ATGCCCGGGCATGT
 T A C G A C G T T C A G G A T C T G C A A T G C C G T A A C G T C T A G A T G C G T C A A C G T A T C G A C G T
G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T

POU2F2/MA0507.1/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTGCACATGCATG-
-TTCATTTGCATAT
 T A C G A C G T T C A G G A T C T G C A A T G C C G T A A C G T C T A G A T G C G T C A A C G T A T C G A C G T
A C G T G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GTGCACATGCATG
--NNACTTGCCTT
 T A C G A C G T T C A G G A T C T G C A A T G C C G T A A C G T C T A G A T G C G T C A A C G T A T C G
A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T