Information for 11-GCAGGCAGCC (Motif 30)

C T A G T G A C G T C A C T A G A C T G A T G C C T G A A C T G T A G C A T G C
Reverse Opposite:
T A C G A T C G G T A C G A C T A T C G G T A C G A T C A C G T A C T G A G T C
p-value:1e-7
log p-value:-1.709e+01
Information Content per bp:1.821
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.52%
Number of Background Sequences with motif148.6
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets54.9 +/- 26.7bp
Average Position of motif in Background48.5 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GCAGGCAGCC-
CTGGCAGNCTGCCA
 A C G T A C G T A C G T C T A G T G A C G T C A C T A G A C T G A T G C C T G A A C T G T A G C A T G C A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCAGGCAGCC-----
SCAGYCADGCATGAC
 C T A G T G A C G T C A C T A G A C T G A T G C C T G A A C T G T A G C A T G C A C G T A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GCAGGCAGCC
DCHCAGCAGGRGGCC
 A C G T A C G T A C G T A C G T A C G T C T A G T G A C G T C A C T A G A C T G A T G C C T G A A C T G T A G C A T G C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GCAGGCAGCC
-----CAGCC
 C T A G T G A C G T C A C T A G A C T G A T G C C T G A A C T G T A G C A T G C
A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

PB0154.1_Osr1_2/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GCAGGCAGCC---
NNNTTAGGTAGCNTNT
 A C G T A C G T A C G T C T A G T G A C G T C A C T A G A C T G A T G C C T G A A C T G T A G C A T G C A C G T A C G T A C G T
A C T G C A G T G C T A C A G T A G C T C G T A C T A G A C T G C G A T C T G A C T A G A G T C C T G A C G A T C T A G G A C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCAGGCAGCC
CCAGACRSVB
 C T A G T G A C G T C A C T A G A C T G A T G C C T G A A C T G T A G C A T G C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCAGGCAGCC
TBGCACGCAA--
 A C G T A C G T C T A G T G A C G T C A C T A G A C T G A T G C C T G A A C T G T A G C A T G C
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T

PB0155.1_Osr2_2/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GCAGGCAGCC---
NNTGTAGGTAGCANNT
 A C G T A C G T A C G T C T A G T G A C G T C A C T A G A C T G A T G C C T G A A C T G T A G C A T G C A C G T A C G T A C G T
A C T G C T A G C G A T C A T G A G C T C G T A C T A G A C T G C G A T C T G A T A C G A G T C C T G A C T G A C T A G G A C T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCAGGCAGCC
ACAGGAAGTG
 C T A G T G A C G T C A C T A G A C T G A T G C C T G A A C T G T A G C A T G C
T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCAGGCAGCC
CCAGACAG--
 C T A G T G A C G T C A C T A G A C T G A T G C C T G A A C T G T A G C A T G C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T