Information for 7-TGCCATTGCC (Motif 20)

C A G T A C T G A T G C G A T C G C T A G A C T C A G T C T A G T G A C G A T C
Reverse Opposite:
C T A G A C T G G A T C G T C A C T G A C G A T C T A G T A C G T G A C G T C A
p-value:1e-9
log p-value:-2.161e+01
Information Content per bp:1.649
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif8.47%
Number of Background Sequences with motif1198.1
Percentage of Background Sequences with motif3.01%
Average Position of motif in Targets50.0 +/- 24.7bp
Average Position of motif in Background49.4 +/- 39.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TGCCATTGCC--
--CCATTGTTYB
 C A G T A C T G A T G C G A T C G C T A G A C T C A G T C T A G T G A C G A T C A C G T A C G T
A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TGCCATTGCC
BNTGDCCTTG--
 A C G T A C G T C A G T A C T G A T G C G A T C G C T A G A C T C A G T C T A G T G A C G A T C
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TGCCATTGCC----
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T C A G T A C T G A T G C G A T C G C T A G A C T C A G T C T A G T G A C G A T C A C G T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TGCCATTGCC
--CCWTTGTY
 C A G T A C T G A T G C G A T C G C T A G A C T C A G T C T A G T G A C G A T C
A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TGCCATTGCC
--CCTTTGTT
 C A G T A C T G A T G C G A T C G C T A G A C T C A G T C T A G T G A C G A T C
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Sox6/MA0515.1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TGCCATTGCC--
--CCATTGTTTT
 C A G T A C T G A T G C G A T C G C T A G A C T C A G T C T A G T G A C G A T C A C G T A C G T
A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

Sox17/MA0078.1/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TGCCATTGCC
-CTCATTGTC
 C A G T A C T G A T G C G A T C G C T A G A C T C A G T C T A G T G A C G A T C
A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGCCATTGCC-
-NCCATTGTTY
 C A G T A C T G A T G C G A T C G C T A G A C T C A G T C T A G T G A C G A T C A C G T
A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TGCCATTGCC-
-NCCATTGTTC
 C A G T A C T G A T G C G A T C G C T A G A C T C A G T C T A G T G A C G A T C A C G T
A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

YY2/MA0748.1/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TGCCATTGCC
GTCCGCCATTA--
 A C G T A C G T A C G T C A G T A C T G A T G C G A T C G C T A G A C T C A G T C T A G T G A C G A T C
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T