Information for 1-CBTCCATGTGACATGT (Motif 2)

G A T C A G T C C G A T T G A C G T A C T C G A G C A T A C T G A C G T A T C G G T C A A G T C T G C A A G C T T A C G A C G T
Reverse Opposite:
T G C A A T G C T C G A A C G T A C T G C A G T T A G C G T C A A G T C C G T A A G C T A C T G A C T G G C T A T C A G C T A G
p-value:1e-17
log p-value:-3.925e+01
Information Content per bp:1.635
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif4.14%
Number of Background Sequences with motif135.9
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets49.6 +/- 23.9bp
Average Position of motif in Background55.0 +/- 40.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

USF2/MA0526.1/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:forward strand
Alignment:CBTCCATGTGACATGT
--GTCATGTGACC---
 G A T C A G T C C G A T T G A C G T A C T C G A G C A T A C T G A C G T A T C G G T C A A G T C T G C A A G C T T A C G A C G T
A C G T A C G T T C A G A G C T A G T C C G T A A G C T A C T G A C G T A C T G T C G A A G T C G A T C A C G T A C G T A C G T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:2
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CBTCCATGTGACATGT
--RTCATGTGAC----
 G A T C A G T C C G A T T G A C G T A C T C G A G C A T A C T G A C G T A T C G G T C A A G T C T G C A A G C T T A C G A C G T
A C G T A C G T T C A G A G C T A T G C C G T A A G C T T C A G C A G T A C T G C T G A A G T C A C G T A C G T A C G T A C G T

USF1/MA0093.2/Jaspar

Match Rank:3
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CBTCCATGTGACATGT
--GCCACGTGACC---
 G A T C A G T C C G A T T G A C G T A C T C G A G C A T A C T G A C G T A T C G G T C A A G T C T G C A A G C T T A C G A C G T
A C G T A C G T T C A G A G T C G T A C C G T A A G T C T C A G A C G T A C T G C T G A A G T C G A T C A C G T A C G T A C G T

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:4
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CBTCCATGTGACATGT
--KCCACGTGAC----
 G A T C A G T C C G A T T G A C G T A C T C G A G C A T A C T G A C G T A T C G G T C A A G T C T G C A A G C T T A C G A C G T
A C G T A C G T A C T G T G A C G T A C C G T A A G T C T A C G A C G T A C T G G T C A A G T C A C G T A C G T A C G T A C G T

Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:5
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CBTCCATGTGACATGT
--ACCACGTGAC----
 G A T C A G T C C G A T T G A C G T A C T C G A G C A T A C T G A C G T A T C G G T C A A G T C T G C A A G C T T A C G A C G T
A C G T A C G T T C G A G A T C A G T C C G T A A G T C T C A G A G C T A C T G T G C A A G T C A C G T A C G T A C G T A C G T

PH0084.1_Irx3_2/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CBTCCATGTGACATGT
NNTATTACATGTANNNT--
 A C G T A C G T A C G T G A T C A G T C C G A T T G A C G T A C T C G A G C A T A C T G A C G T A T C G G T C A A G T C T G C A A G C T T A C G A C G T
G C A T C T G A G C A T G C T A A C G T C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A C G A T G C T A G C A T G C A T A C G T A C G T

E-box(bHLH)/Promoter/Homer

Match Rank:7
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CBTCCATGTGACATGT
---TCACGTGACCGG-
 G A T C A G T C C G A T T G A C G T A C T C G A G C A T A C T G A C G T A T C G G T C A A G T C T G C A A G C T T A C G A C G T
A C G T A C G T A C G T A G C T A G T C C G T A A G T C T C A G C G A T A C T G T C G A A T G C T A G C T A C G T A C G A C G T

Arntl/MA0603.1/Jaspar

Match Rank:8
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CBTCCATGTGACATGT
---NCACGTGACN---
 G A T C A G T C C G A T T G A C G T A C T C G A G C A T A C T G A C G T A T C G G T C A A G T C T G C A A G C T T A C G A C G T
A C G T A C G T A C G T C T A G G T A C C T G A A G T C T C A G C G A T A C T G G T C A A G T C G T A C A C G T A C G T A C G T

PH0085.1_Irx4/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CBTCCATGTGACATGT
AATATACATGTAAAACA-
 A C G T A C G T G A T C A G T C C G A T T G A C G T A C T C G A G C A T A C T G A C G T A T C G G T C A A G T C T G C A A G C T T A C G A C G T
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A A C G T

PH0082.1_Irx2/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CBTCCATGTGACATGT
ANTNTTACATGTATNTA--
 A C G T A C G T A C G T G A T C A G T C C G A T T G A C G T A C T C G A G C A T A C T G A C G T A T C G G T C A A G T C T G C A A G C T T A C G A C G T
C G T A T G C A G C A T G A C T G A C T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A G A C T G C A T C G A T G C T A A C G T A C G T