Information for 7-GGATCATCATACATCY (Motif 13)

A C T G A C T G G T C A C A G T G T A C T C G A A C G T T A G C C G T A A C G T T C G A A G T C C G T A A C G T A T G C G A T C
Reverse Opposite:
C T A G A T C G C G T A A C G T A C T G A C G T G T C A A C G T A C T G C G T A A G C T A C T G G C T A A C G T T A G C A G T C
p-value:1e-11
log p-value:-2.727e+01
Information Content per bp:1.743
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.0 +/- 19.7bp
Average Position of motif in Background58.9 +/- 19.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.63
Offset:5
Orientation:forward strand
Alignment:GGATCATCATACATCY-
-----GYCATCMATCAT
 A C T G A C T G G T C A C A G T G T A C T C G A A C G T T A G C C G T A A C G T T C G A A G T C C G T A A C G T A T G C G A T C A C G T
A C G T A C G T A C G T A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

DMRT3/MA0610.1/Jaspar

Match Rank:2
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GGATCATCATACATCY
----NTTGATACATT-
 A C T G A C T G G T C A C A G T G T A C T C G A A C G T T A G C C G T A A C G T T C G A A G T C C G T A A C G T A T G C G A T C
A C G T A C G T A C G T A C G T C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T A C G T

NFE2/MA0841.1/Jaspar

Match Rank:3
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GGATCATCATACATCY
----CATGACTCATC-
 A C T G A C T G G T C A C A G T G T A C T C G A A C G T T A G C C G T A A C G T T C G A A G T C C G T A A C G T A T G C G A T C
A C G T A C G T A C G T A C G T T G A C T C G A G A C T A C T G G T C A T A G C A G C T G A T C T G C A A G C T A T G C A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:4
Score:0.56
Offset:6
Orientation:forward strand
Alignment:GGATCATCATACATCY-------
------TCACCCATCAATAAACA
 A C T G A C T G G T C A C A G T G T A C T C G A A C G T T A G C C G T A A C G T T C G A A G T C C G T A A C G T A T G C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GGATCATCATACATCY
-----GCCATAAATCA
 A C T G A C T G G T C A C A G T G T A C T C G A A C G T T A G C C G T A A C G T T C G A A G T C C G T A A C G T A T G C G A T C
A C G T A C G T A C G T A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

JDP2/MA0655.1/Jaspar

Match Rank:6
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GGATCATCATACATCY
-----ATGAGTCAT--
 A C T G A C T G G T C A C A G T G T A C T C G A A C G T T A G C C G T A A C G T T C G A A G T C C G T A A C G T A T G C G A T C
A C G T A C G T A C G T A C G T A C G T C T G A C G A T C A T G G C T A A T C G G C A T T G A C C T G A A G C T A C G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GGATCATCATACATCY
--TGAATTATGCAT--
 A C T G A C T G G T C A C A G T G T A C T C G A A C G T T A G C C G T A A C G T T C G A A G T C C G T A A C G T A T G C G A T C
A C G T A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:8
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GGATCATCATACATCY
------TCATCAATCA
 A C T G A C T G G T C A C A G T G T A C T C G A A C G T T A G C C G T A A C G T T C G A A G T C C G T A A C G T A T G C G A T C
A C G T A C G T A C G T A C G T A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GGATCATCATACATCY
----GAATATTCAT--
 A C T G A C T G G T C A C A G T G T A C T C G A A C G T T A G C C G T A A C G T T C G A A G T C C G T A A C G T A T G C G A T C
A C G T A C G T A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T

Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer

Match Rank:10
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GGATCATCATACATCY
----GATGAGTCATCC
 A C T G A C T G G T C A C A G T G T A C T C G A A C G T T A G C C G T A A C G T T C G A A G T C C G T A A C G T A T G C G A T C
A C G T A C G T A C G T A C G T C T A G T C G A G A C T A C T G C G T A A T C G C G A T T G A C C G T A A G C T G A T C G T A C