Information for 7-CACAAACATGTCA (Motif 12)

G T A C C G T A A G T C C G T A C G T A T G C A A G T C G T C A G A C T T A C G A G C T A G T C G C T A
Reverse Opposite:
C G A T A C T G C T G A A T G C C G T A A C G T C T A G A C G T C G A T A C G T C T A G C G A T A C T G
p-value:1e-13
log p-value:-3.166e+01
Information Content per bp:1.787
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.62%
Number of Background Sequences with motif9.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets61.7 +/- 26.4bp
Average Position of motif in Background53.7 +/- 53.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CACAAACATGTCA
---AAYTAGGTCA
 G T A C C G T A A G T C C G T A C G T A T G C A A G T C G T C A G A C T T A C G A G C T A G T C G C T A
A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

MF0005.1_Forkhead_class/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CACAAACATGTCA
AAATAAACA-----
 A C G T G T A C C G T A A G T C C G T A C G T A T G C A A G T C G T C A G A C T T A C G A G C T A G T C G C T A
T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:3
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:CACAAACATGTCA-
-------NTGTCAN
 G T A C C G T A A G T C C G T A C G T A T G C A A G T C G T C A G A C T T A C G A G C T A G T C G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A

MEIS3/MA0775.1/Jaspar

Match Rank:4
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:CACAAACATGTCA-
------CCTGTCAA
 G T A C C G T A A G T C C G T A C G T A T G C A A G T C G T C A G A C T T A C G A G C T A G T C G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CACAAACATGTCA-
TATAAGTAGGTCAA
 G T A C C G T A A G T C C G T A C G T A T G C A A G T C G T C A G A C T T A C G A G C T A G T C G C T A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

PB0172.1_Sox1_2/Jaspar

Match Rank:6
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CACAAACATGTCA
NNNTAACAATTATAN--
 A C G T A C G T A C G T A C G T G T A C C G T A A G T C C G T A C G T A T G C A A G T C G T C A G A C T T A C G A G C T A G T C G C T A
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CACAAACATGTCA
-ACAAAGGNBCCT
 G T A C C G T A A G T C C G T A C G T A T G C A A G T C G T C A G A C T T A C G A G C T A G T C G C T A
A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

FOXP3/MA0850.1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CACAAACATGTCA
-GTAAACA-----
 G T A C C G T A A G T C C G T A C G T A T G C A A G T C G T C A G A C T T A C G A G C T A G T C G C T A
A C G T C T A G G A C T C G T A C T G A T C G A A G T C C T G A A C G T A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:9
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CACAAACATGTCA
NWAACCACADNN------
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A A G T C C G T A C G T A T G C A A G T C G T C A G A C T T A C G A G C T A G T C G C T A
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T

FOXL1/MA0033.2/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CACAAACATGTCA
-GTAAACA-----
 G T A C C G T A A G T C C G T A C G T A T G C A A G T C G T C A G A C T T A C G A G C T A G T C G C T A
A C G T C T A G G A C T T G C A G T C A T G C A A G T C G T C A A C G T A C G T A C G T A C G T A C G T