Information for 4-TGKCTTSKTCYTR (Motif 7)

A C G T A C T G A C G T A G T C A C G T A C G T A T C G A C T G A C G T A G T C A G C T A C G T C T G A
Reverse Opposite:
A G C T C G T A C T G A A C T G C G T A G T A C A T G C C G T A C G T A A C T G G T C A A G T C C G T A
p-value:1e-10
log p-value:-2.383e+01
Information Content per bp:1.857
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets21.8 +/- 7.7bp
Average Position of motif in Background11.9 +/- 1.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TGKCTTSKTCYTR
TTGACTTTT-----
 A C G T A C G T A C T G A C G T A G T C A C G T A C G T A T C G A C T G A C G T A G T C A G C T A C G T C T G A
C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGKCTTSKTCYTR
TWGTCTGV------
 A C G T A C G T A C T G A C G T A G T C A C G T A C G T A T C G A C T G A C G T A G T C A G C T A C G T C T G A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGKCTTSKTCYTR
CTGTCTGTCACCT-
 A C G T A C G T A C T G A C G T A G T C A C G T A C G T A T C G A C T G A C G T A G T C A G C T A C G T C T G A
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.53
Offset:2
Orientation:forward strand
Alignment:TGKCTTSKTCYTR
--CCTTTGTTTT-
 A C G T A C T G A C G T A G T C A C G T A C G T A T C G A C T G A C G T A G T C A G C T A C G T C T G A
A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TGKCTTSKTCYTR
CTGTCTGG------
 A C G T A C G T A C T G A C G T A G T C A C G T A C G T A T C G A C T G A C G T A G T C A G C T A C G T C T G A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----TGKCTTSKTCYTR
NNTNNTGTCTGGNNTNG-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C G T A T C G A C T G A C G T A G T C A G C T A C G T C T G A
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:7
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----TGKCTTSKTCYTR
NNCTTTGTTTTGNTNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C G T A T C G A C T G A C G T A G T C A G C T A C G T C T G A
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TGKCTTSKTCYTR
TGTCTGDCACCT-
 A C G T A C T G A C G T A G T C A C G T A C G T A T C G A C T G A C G T A G T C A G C T A C G T C T G A
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:forward strand
Alignment:TGKCTTSKTCYTR
--GCTTCC-----
 A C G T A C T G A C G T A G T C A C G T A C G T A T C G A C T G A C G T A G T C A G C T A C G T C T G A
A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:forward strand
Alignment:TGKCTTSKTCYTR
--CCATTGTTTT-
 A C G T A C T G A C G T A G T C A C G T A C G T A T C G A C T G A C G T A G T C A G C T A C G T C T G A
A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T