Information for 2-GCGCCTGCAGVTTGCG (Motif 3)

A C T G A T G C A C T G A G T C A G T C A C G T A T C G G T A C G T C A A T C G T A G C C G A T A C G T A C T G A G T C A C T G
Reverse Opposite:
A G T C A C T G A G T C G T C A C G T A A C T G T A G C A C G T A C T G A T G C G T C A A C T G C T A G A G T C A T C G A G T C
p-value:1e-11
log p-value:-2.701e+01
Information Content per bp:1.793
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.2 +/- 32.8bp
Average Position of motif in Background40.9 +/- 18.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCGCCTGCAGVTTGCG------
--GCCASCAGGGGGCGCYVNNG
 A C T G A T G C A C T G A G T C A G T C A C G T A T C G G T A C G T C A A T C G T A G C C G A T A C G T A C T G A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

POL006.1_BREu/Jaspar

Match Rank:2
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GCGCCTGCAGVTTGCG
AGCGCGCC-----------
 A C G T A C G T A C G T A C T G A T G C A C T G A G T C A G T C A C G T A T C G G T A C G T C A A T C G T A G C C G A T A C G T A C T G A G T C A C T G
T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NRF1/MA0506.1/Jaspar

Match Rank:3
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GCGCCTGCAGVTTGCG
GCGCCTGCGCA-----
 A C T G A T G C A C T G A G T C A G T C A C G T A T C G G T A C G T C A A T C G T A G C C G A T A C G T A C T G A G T C A C T G
T C A G G T A C T C A G A T G C T G A C A C G T A C T G A G T C A T C G G T A C T C G A A C G T A C G T A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GCGCCTGCAGVTTGCG---
TGGCCACCAGGGGGCGCTA
 A C T G A T G C A C T G A G T C A G T C A C G T A T C G G T A C G T C A A T C G T A G C C G A T A C G T A C T G A G T C A C T G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--GCGCCTGCAGVTTGCG
SNGCACCTGCHS------
 A C G T A C G T A C T G A T G C A C T G A G T C A G T C A C G T A T C G G T A C G T C A A T C G T A G C C G A T A C G T A C T G A G T C A C T G
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:6
Score:0.50
Offset:-6
Orientation:forward strand
Alignment:------GCGCCTGCAGVTTGCG
AGCTCGGCGCCAAAAGC-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A C T G A G T C A G T C A C G T A T C G G T A C G T C A A T C G T A G C C G A T A C G T A C T G A G T C A C T G
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C A C G T A C G T A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:7
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:GCGCCTGCAGVTTGCG
--GCCGCCATCTTG--
 A C T G A T G C A C T G A G T C A G T C A C G T A T C G G T A C G T C A A T C G T A G C C G A T A C G T A C T G A G T C A C T G
A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:GCGCCTGCAGVTTGCG----
TGGCCACCAGGTGGCACTNT
 A C T G A T G C A C T G A G T C A G T C A C G T A T C G G T A C G T C A A T C G T A G C C G A T A C G T A C T G A G T C A C T G A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--GCGCCTGCAGVTTGCG
CTGCGCATGCGC------
 A C G T A C G T A C T G A T G C A C T G A G T C A G T C A C G T A T C G G T A C G T C A A T C G T A G C C G A T A C G T A C T G A G T C A C T G
A T G C A G C T T C A G T G A C T C A G A T G C T G C A A C G T A T C G G A T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

E2F1/MA0024.3/Jaspar

Match Rank:10
Score:0.47
Offset:-4
Orientation:reverse strand
Alignment:----GCGCCTGCAGVTTGCG
TTTGGCGCCAAA--------
 A C G T A C G T A C G T A C G T A C T G A T G C A C T G A G T C A G T C A C G T A T C G G T A C G T C A A T C G T A G C C G A T A C G T A C T G A G T C A C T G
G C A T C G A T C A G T T C A G A T C G A T G C C T A G A T G C A T G C G C T A G C T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T