Information for 9-CTCYCACCCRGTGTYT (Motif 19)

A G T C A C G T A T G C A G T C A T G C C G T A A G T C A G T C A T G C C T G A A T C G C G A T A C T G A G C T A G C T A C G T
Reverse Opposite:
C G T A C T G A C T G A T G A C C G T A A T G C A G C T A T C G C T A G T A C G C G A T A T C G C T A G A T C G C G T A A C T G
p-value:1e-9
log p-value:-2.176e+01
Information Content per bp:1.744
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.6 +/- 22.5bp
Average Position of motif in Background60.2 +/- 9.4bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.60
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:1
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CTCYCACCCRGTGTYT
GSCTGTCACTCA------
 A C G T A C G T A G T C A C G T A T G C A G T C A T G C C G T A A G T C A G T C A T G C C T G A A T C G C G A T A C T G A G C T A G C T A C G T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CTCYCACCCRGTGTYT
CTGTCTGTCACCT-------
 A C G T A C G T A C G T A C G T A G T C A C G T A T G C A G T C A T G C C G T A A G T C A G T C A T G C C T G A A T C G C G A T A C T G A G C T A G C T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

E2F6/MA0471.1/Jaspar

Match Rank:3
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CTCYCACCCRGTGTYT
NCTTCCCGCCC-------
 A C G T A C G T A G T C A C G T A T G C A G T C A T G C C G T A A G T C A G T C A T G C C T G A A T C G C G A T A C T G A G C T A G C T A C G T
A G T C A G T C A G C T A C G T A T G C A G T C A G T C C A T G A G T C A G T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CTCYCACCCRGTGTYT
NCTGTCAATCAN-----
 A C G T A G T C A C G T A T G C A G T C A T G C C G T A A G T C A G T C A T G C C T G A A T C G C G A T A C T G A G C T A G C T A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---CTCYCACCCRGTGTYT
TGTCTGDCACCT-------
 A C G T A C G T A C G T A G T C A C G T A T G C A G T C A T G C C G T A A G T C A G T C A T G C C T G A A T C G C G A T A C T G A G C T A G C T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CTCYCACCCRGTGTYT
CRCCCACGCA------
 A G T C A C G T A T G C A G T C A T G C C G T A A G T C A G T C A T G C C T G A A T C G C G A T A C T G A G C T A G C T A C G T
G A T C C T G A A G T C T G A C A G T C G T C A A G T C C T A G A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-CTCYCACCCRGTGTYT
SCTGTCAVTCAV-----
 A C G T A G T C A C G T A T G C A G T C A T G C C G T A A G T C A G T C A T G C C T G A A T C G C G A T A C T G A G C T A G C T A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--CTCYCACCCRGTGTYT
VGCTGWCAVB--------
 A C G T A C G T A G T C A C G T A T G C A G T C A T G C C G T A A G T C A G T C A T G C C T G A A T C G C G A T A C T G A G C T A G C T A C G T
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0140.1_Irf6_2/Jaspar

Match Rank:9
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----CTCYCACCCRGTGTYT
ACCACTCTCGGTCAC-----
 A C G T A C G T A C G T A C G T A G T C A C G T A T G C A G T C A T G C C G T A A G T C A G T C A T G C C T G A A T C G C G A T A C T G A G C T A G C T A C G T
T G C A A G T C A G T C G C T A G T A C C A G T A T G C A G C T A G T C C T A G T C A G C A G T G A T C C T G A T A G C A C G T A C G T A C G T A C G T A C G T

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:10
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CTCYCACCCRGTGTYT
YCCGCCCACGCN------
 A C G T A C G T A G T C A C G T A T G C A G T C A T G C C G T A A G T C A G T C A T G C C T G A A T C G C G A T A C T G A G C T A G C T A C G T
G A T C G T A C G A T C C T A G A G T C A G T C A G T C G T C A A G T C C T A G A T G C T C G A A C G T A C G T A C G T A C G T A C G T A C G T