Motif 13

Information for 8-GCCTTAGGGC (Motif 13)

Reverse Opposite:

p-value:	1e-12
log p-value:	-2.868e+01
Information Content per bp:	1.659
Number of Target Sequences with motif	65.0
Percentage of Target Sequences with motif	8.12%
Number of Background Sequences with motif	1378.8
Percentage of Background Sequences with motif	2.91%
Average Position of motif in Targets	46.7 +/- 27.1bp
Average Position of motif in Background	49.7 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)	-0.3
Multiplicity (# of sites on avg that occur together)	1.03
Motif File:	file (matrix) reverse opposite
SVG Files for Logos:	forward logo reverse opposite

Matches to Known Motifs

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:	1
Score:	0.85
Offset:	0
Orientation:	reverse strand
Alignment:	GCCTTAGGGC-- GCCTCAGGGCAT

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:	2
Score:	0.83
Offset:	-1
Orientation:	reverse strand
Alignment:	-GCCTTAGGGC- TGCCCNGGGGCA

TFAP2B/MA0811.1/Jaspar

Match Rank:	3
Score:	0.83
Offset:	-1
Orientation:	reverse strand
Alignment:	-GCCTTAGGGC- TGCCCTNGGGCA

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:	4
Score:	0.82
Offset:	-2
Orientation:	forward strand
Alignment:	--GCCTTAGGGC-- TTGCCCTAGGGCAT

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:	5
Score:	0.82
Offset:	0
Orientation:	forward strand
Alignment:	GCCTTAGGGC-- SCCTSAGGSCAW

TFAP2C/MA0524.2/Jaspar

Match Rank:	6
Score:	0.82
Offset:	-1
Orientation:	reverse strand
Alignment:	-GCCTTAGGGC- TGCCCTNGGGCA

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:	7
Score:	0.80
Offset:	-2
Orientation:	forward strand
Alignment:	--GCCTTAGGGC-- TCACCTCTGGGCAG

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:	8
Score:	0.78
Offset:	-2
Orientation:	forward strand
Alignment:	--GCCTTAGGGC-- CCGCCCAAGGGCAG

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:	9
Score:	0.72
Offset:	-1
Orientation:	reverse strand
Alignment:	-GCCTTAGGGC TGCCTGAGGCN

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:	10
Score:	0.71
Offset:	-1
Orientation:	reverse strand
Alignment:	-GCCTTAGGGC NGCCTNAGGCN