Information for 1-SCWDWGCAAACAN (Motif 1)

T A G C G A T C C G A T C T A G C G T A C A T G G A T C C G T A C G T A C G T A G A T C C G T A A T C G
Reverse Opposite:
T A G C A C G T C T A G A C G T A C G T A C G T C T A G G T A C G C A T G A T C C G T A C T A G A T C G
p-value:1e-66
log p-value:-1.538e+02
Information Content per bp:1.637
Number of Target Sequences with motif168.0
Percentage of Target Sequences with motif21.00%
Number of Background Sequences with motif1957.2
Percentage of Background Sequences with motif4.14%
Average Position of motif in Targets51.7 +/- 25.6bp
Average Position of motif in Background51.9 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:1
Score:0.94
Offset:-3
Orientation:forward strand
Alignment:---SCWDWGCAAACAN-
NNNVCTGWGYAAACASN
 A C G T A C G T A C G T T A G C G A T C C G A T C T A G C G T A C A T G G A T C C G T A C G T A C G T A G A T C C G T A A T C G A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:2
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:SCWDWGCAAACAN
--WAAGTAAAYA-
 T A G C G A T C C G A T C T A G C G T A C A T G G A T C C G T A C G T A C G T A G A T C C G T A A T C G
A C G T A C G T G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A A C G T

FOXA1/MA0148.3/Jaspar

Match Rank:3
Score:0.92
Offset:1
Orientation:reverse strand
Alignment:SCWDWGCAAACAN---
-CAAAGTAAACANNNN
 T A G C G A T C C G A T C T A G C G T A C A T G G A T C C G T A C G T A C G T A G A T C C G T A A T C G A C G T A C G T A C G T
A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.92
Offset:2
Orientation:forward strand
Alignment:SCWDWGCAAACAN
--AAAGTAAACA-
 T A G C G A T C C G A T C T A G C G T A C A T G G A T C C G T A C G T A C G T A G A T C C G T A A T C G
A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:5
Score:0.92
Offset:2
Orientation:forward strand
Alignment:SCWDWGCAAACAN
--AAAGTAAACA-
 T A G C G A T C C G A T C T A G C G T A C A T G G A T C C G T A C G T A C G T A G A T C C G T A A T C G
A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T

Foxa2/MA0047.2/Jaspar

Match Rank:6
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:SCWDWGCAAACAN
NCTAAGTAAACA-
 T A G C G A T C C G A T C T A G C G T A C A T G G A T C C G T A C G T A C G T A G A T C C G T A A T C G
T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A A C G T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:7
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:SCWDWGCAAACAN--
NCWRWGTAAACANSV
 T A G C G A T C C G A T C T A G C G T A C A T G G A T C C G T A C G T A C G T A G A T C C G T A A T C G A C G T A C G T
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:8
Score:0.89
Offset:2
Orientation:reverse strand
Alignment:SCWDWGCAAACAN-
--TATGTAAACANG
 T A G C G A T C C G A T C T A G C G T A C A T G G A T C C G T A C G T A C G T A G A T C C G T A A T C G A C G T
A C G T A C G T G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

FOXD2/MA0847.1/Jaspar

Match Rank:9
Score:0.88
Offset:5
Orientation:forward strand
Alignment:SCWDWGCAAACAN
-----GTAAACA-
 T A G C G A T C C G A T C T A G C G T A C A T G G A T C C G T A C G T A C G T A G A T C C G T A A T C G
A C G T A C G T A C G T A C G T A C G T T C A G G A C T G T C A G T C A C G T A A G T C C T G A A C G T

FOXP3/MA0850.1/Jaspar

Match Rank:10
Score:0.88
Offset:5
Orientation:forward strand
Alignment:SCWDWGCAAACAN
-----GTAAACA-
 T A G C G A T C C G A T C T A G C G T A C A T G G A T C C G T A C G T A C G T A G A T C C G T A A T C G
A C G T A C G T A C G T A C G T A C G T C T A G G A C T C G T A C T G A T C G A A G T C C T G A A C G T