Information for 9-CTTTGGCAAA (Motif 9)

A T G C A G C T A G C T C G A T A T C G T C A G A G T C C G T A C G T A C T G A
Reverse Opposite:
A G C T G C A T G C A T T A C G A G T C T A G C G C T A T C G A T C G A T A C G
p-value:1e-11
log p-value:-2.738e+01
Information Content per bp:1.687
Number of Target Sequences with motif64.0
Percentage of Target Sequences with motif7.95%
Number of Background Sequences with motif1396.5
Percentage of Background Sequences with motif2.91%
Average Position of motif in Targets53.0 +/- 27.4bp
Average Position of motif in Background49.9 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:CTTTGGCAAA
-NTTGGCANN
 A T G C A G C T A G C T C G A T A T C G T C A G A G T C C G T A C G T A C T G A
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CTTTGGCAAA
NNTTGGCANN
 A T G C A G C T A G C T C G A T A T C G T C A G A G T C C G T A C G T A C T G A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:CTTTGGCAAA
-CTTGGCAA-
 A T G C A G C T A G C T C G A T A T C G T C A G A G T C C G T A C G T A C T G A
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CTTTGGCAAA
--TTGGCA--
 A T G C A G C T A G C T C G A T A T C G T C A G A G T C C G T A C G T A C T G A
A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTTTGGCAAA----
ACCGTGACTAATTNN
 A C G T A T G C A G C T A G C T C G A T A T C G T C A G A G T C C G T A C G T A C T G A A C G T A C G T A C G T A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.60
Offset:-8
Orientation:forward strand
Alignment:--------CTTTGGCAAA
NNTGTTTATTTTGGCA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A G C T C G A T A T C G T C A G A G T C C G T A C G T A C T G A
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A A C G T A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:7
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CTTTGGCAAA
---TGGAAAA
 A T G C A G C T A G C T C G A T A T C G T C A G A G T C C G T A C G T A C T G A
A C G T A C G T A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTTTGGCAAA
GGTTGGCAT-
 A T G C A G C T A G C T C G A T A T C G T C A G A G T C C G T A C G T A C T G A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTTTGGCAAA-
-NATGGAAAAN
 A T G C A G C T A G C T C G A T A T C G T C A G A G T C C G T A C G T A C T G A A C G T
A C G T G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTTTGGCAAA-
TGATTGGCTANN
 A C G T A T G C A G C T A G C T C G A T A T C G T C A G A G T C C G T A C G T A C T G A A C G T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T