Information for 1-CAGGTCASNSTGMCCT (Motif 2)

G T A C C G T A C A T G C T A G C A G T A G T C C G T A T A C G C G T A A T G C A C G T A T C G G T C A G A T C G T A C G A C T
Reverse Opposite:
C T G A C A T G C T A G C A G T A T G C C G T A T A C G C G A T A T G C A C G T A C T G G T C A G A T C G T A C G C A T A C T G
p-value:1e-36
log p-value:-8.293e+01
Information Content per bp:1.627
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif6.34%
Number of Background Sequences with motif260.5
Percentage of Background Sequences with motif0.54%
Average Position of motif in Targets51.7 +/- 20.7bp
Average Position of motif in Background50.0 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.93
Offset:0
Orientation:forward strand
Alignment:CAGGTCASNSTGMCCT
NAGGTCACNNTGACC-
 G T A C C G T A C A T G C T A G C A G T A G T C C G T A T A C G C G T A A T G C A C G T A T C G G T C A G A T C G T A C G A C T
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A C G T

ESR2/MA0258.2/Jaspar

Match Rank:2
Score:0.91
Offset:1
Orientation:forward strand
Alignment:CAGGTCASNSTGMCCT
-AGGTCACCCTGACCT
 G T A C C G T A C A T G C T A G C A G T A G T C C G T A T A C G C G T A A T G C A C G T A T C G G T C A G A T C G T A C G A C T
A C G T C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

ESR1/MA0112.3/Jaspar

Match Rank:3
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:CAGGTCASNSTGMCCT-
CAGGTCACCGTGACCTT
 G T A C C G T A C A T G C T A G C A G T A G T C C G T A T A C G C G T A A T G C A C G T A T C G G T C A G A T C G T A C G A C T A C G T
T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T

PPARG/MA0066.1/Jaspar

Match Rank:4
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-CAGGTCASNSTGMCCT---
GTAGGTCACGGTGACCTACT
 A C G T G T A C C G T A C A T G C T A G C A G T A G T C C G T A T A C G C G T A A T G C A C G T A T C G G T C A G A T C G T A C G A C T A C G T A C G T A C G T
A T C G C G A T C T G A A T C G C A T G A C G T T A G C G C T A G T A C A T C G C A T G C A G T T A C G G T C A G T A C A G T C G A C T G T C A A T G C C G A T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CAGGTCASNSTGMCCT
NAGAACAGNCTGTNCT
 G T A C C G T A C A T G C T A G C A G T A G T C C G T A T A C G C G T A A T G C A C G T A T C G G T C A G A T C G T A C G A C T
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CAGGTCASNSTGMCCT
NAGNACANNNTGTNCT
 G T A C C G T A C A T G C T A G C A G T A G T C C G T A T A C G C G T A A T G C A C G T A T C G G T C A G A T C G T A C G A C T
T A C G C T G A C T A G T C G A C G T A A G T C C T G A A T C G G C A T T A G C G A C T A C T G A C G T A G C T A G T C G A C T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CAGGTCASNSTGMCCT
VAGRACAKWCTGTYC-
 G T A C C G T A C A T G C T A G C A G T A G T C C G T A T A C G C G T A A T G C A C G T A T C G G T C A G A T C G T A C G A C T
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:8
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CAGGTCASNSTGMCCT
VAGRACAKNCTGTBC-
 G T A C C G T A C A T G C T A G C A G T A G T C C G T A T A C G C G T A A T G C A C G T A T C G G T C A G A T C G T A C G A C T
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CAGGTCASNSTGMCCT
TRAGGTCA---------
 A C G T G T A C C G T A C A T G C T A G C A G T A G T C C G T A T A C G C G T A A T G C A C G T A T C G G T C A G A T C G T A C G A C T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:10
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CAGGTCASNSTGMCCT--
--TGACCCAGTGACCTAC
 G T A C C G T A C A T G C T A G C A G T A G T C C G T A T A C G C G T A A T G C A C G T A T C G G T C A G A T C G T A C G A C T A C G T A C G T
A C G T A C G T G C A T T A C G G C T A A T G C G T A C A G T C T G C A T A C G C G A T C A T G T G C A T G A C G A T C G A C T T C G A T A G C