Information for 6-GCTGGCAAGATGCCCC (Motif 16)

A C T G A G T C A C G T A C T G A C T G A G T C C G T A C T G A A T C G C G T A A C G T A C T G A T G C A G T C A G T C T A G C
Reverse Opposite:
A C T G A C T G A C T G A T C G A G T C G T C A G A C T A T G C A G C T A C G T C T A G A G T C A G T C C G T A A C T G A G T C
p-value:1e-8
log p-value:-1.955e+01
Information Content per bp:1.838
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.5 +/- 17.5bp
Average Position of motif in Background8.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GCTGGCAAGATGCCCC
-CTGGCAGNCTGCCA-
 A C T G A G T C A C G T A C T G A C T G A G T C C G T A C T G A A T C G C G T A A C G T A C T G A T G C A G T C A G T C T A G C
A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GCTGGCAAGATGCCCC-
-TTGGCANNNTGCCAAG
 A C T G A G T C A C G T A C T G A C T G A G T C C G T A C T G A A T C G C G T A A C G T A C T G A T G C A G T C A G T C T A G C A C G T
A C G T G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GCTGGCAAGATGCCCC
--TGGCACCATGCCAA
 A C T G A G T C A C G T A C T G A C T G A G T C C G T A C T G A A T C G C G T A A C G T A C T G A T G C A G T C A G T C T A G C
A C G T A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCTGGCAAGATGCCCC
CTTGGCAA--------
 A C T G A G T C A C G T A C T G A C T G A G T C C G T A C T G A A T C G C G T A A C G T A C T G A T G C A G T C A G T C T A G C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCTGGCAAGATGCCCC
GGTTGGCAT--------
 A C G T A C T G A G T C A C G T A C T G A C T G A G T C C G T A C T G A A T C G C G T A A C G T A C T G A T G C A G T C A G T C T A G C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCTGGCAAGATGCCCC
GCTGTCAA--------
 A C T G A G T C A C G T A C T G A C T G A G T C C G T A C T G A A T C G C G T A A C G T A C T G A T G C A G T C A G T C T A G C
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCTGGCAAGATGCCCC
NTTGGCANN-------
 A C T G A G T C A C G T A C T G A C T G A G T C C G T A C T G A A T C G C G T A A C G T A C T G A T G C A G T C A G T C T A G C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----GCTGGCAAGATGCCCC
NGTAGGTTGGCATNNN-----
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A C T G A G T C C G T A C T G A A T C G C G T A A C G T A C T G A T G C A G T C A G T C T A G C
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GCTGGCAAGATGCCCC
VGCTGWCAVB-------
 A C G T A C T G A G T C A C G T A C T G A C T G A G T C C G T A C T G A A T C G C G T A A C G T A C T G A T G C A G T C A G T C T A G C
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GCTGGCAAGATGCCCC
-TTGGCA---------
 A C T G A G T C A C G T A C T G A C T G A G T C C G T A C T G A A T C G C G T A A C G T A C T G A T G C A G T C A G T C T A G C
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T