Information for 12-CCTMTTAAAGARA (Motif 12)

A T G C A G T C A C G T G T A C A C G T A C G T C G T A C G T A C G T A A C T G C G T A C T A G C G T A
Reverse Opposite:
C G A T A G T C A C G T T G A C A C G T A C G T A C G T C G T A C G T A A C T G C G T A A C T G A T C G
p-value:1e-11
log p-value:-2.597e+01
Information Content per bp:1.871
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.9 +/- 31.6bp
Average Position of motif in Background46.4 +/- 22.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCTMTTAAAGARA
NGCAATTAAA----
 A C G T A T G C A G T C A C G T G T A C A C G T A C G T C G T A C G T A C G T A A C T G C G T A C T A G C G T A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCTMTTAAAGARA
GCTCGTAAAAA--
 A T G C A G T C A C G T G T A C A C G T A C G T C G T A C G T A C G T A A C T G C G T A C T A G C G T A
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CCTMTTAAAGARA
AAACCTCGTAAAATTT
 A C G T A C G T A C G T A T G C A G T C A C G T G T A C A C G T A C G T C G T A C G T A C G T A A C T G C G T A C T A G C G T A
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CCTMTTAAAGARA
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T A T G C A G T C A C G T G T A C A C G T A C G T C G T A C G T A C G T A A C T G C G T A C T A G C G T A
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

Arid3a/MA0151.1/Jaspar

Match Rank:5
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CCTMTTAAAGARA
---ATTAAA----
 A T G C A G T C A C G T G T A C A C G T A C G T C G T A C G T A C G T A A C T G C G T A C T A G C G T A
A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T

Nkx2-5/MA0063.1/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CCTMTTAAAGARA
-CAATTAA-----
 A T G C A G T C A C G T G T A C A C G T A C G T C G T A C G T A C G T A A C T G C G T A C T A G C G T A
A C G T G T A C C G T A G T C A A C G T A C G T C T G A G C T A A C G T A C G T A C G T A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:7
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CCTMTTAAAGARA
CTTAACCACTTAAGGAT-
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C A C G T G T A C A C G T A C G T C G T A C G T A C G T A A C T G C G T A C T A G C G T A
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCTMTTAAAGARA
CCTTTTATAGNC-
 A T G C A G T C A C G T G T A C A C G T A C G T C G T A C G T A C G T A A C T G C G T A C T A G C G T A
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CCTMTTAAAGARA----
-AAAGTAAACAAAAATT
 A T G C A G T C A C G T G T A C A C G T A C G T C G T A C G T A C G T A A C T G C G T A C T A G C G T A A C G T A C G T A C G T A C G T
A C G T G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CCTMTTAAAGARA
CATAACCACTTAACAAC-
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C A C G T G T A C A C G T A C G T C G T A C G T A C G T A A C T G C G T A C T A G C G T A
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C A C G T