Information for 5-CCTWTGTTCAGGA (Motif 5)

A G T C T G A C A C G T C G A T A C G T A T C G A C G T C G A T A G T C C G T A A C T G A C T G C T G A
Reverse Opposite:
A G C T A G T C A G T C A C G T C T A G C G T A C G T A A T G C C G T A C G T A C G T A A C T G T A C G
p-value:1e-12
log p-value:-2.811e+01
Information Content per bp:1.803
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets65.7 +/- 20.0bp
Average Position of motif in Background65.7 +/- 20.1bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCTWTGTTCAGGA
YCTTTGTTCC---
 A G T C T G A C A C G T C G A T A C G T A T C G A C G T C G A T A G T C C G T A A C T G A C T G C T G A
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CCTWTGTTCAGGA
NNNTCCTTTGTTCTNNN
 A C G T A C G T A C G T A C G T A G T C T G A C A C G T C G A T A C G T A T C G A C G T C G A T A G T C C G T A A C T G A C T G C T G A
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCTWTGTTCAGGA
CCTTTGTTTT---
 A G T C T G A C A C G T C G A T A C G T A T C G A C G T C G A T A G T C C G T A A C T G A C T G C T G A
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CCTWTGTTCAGGA
TNNTCCTTTGTTCTNNT
 A C G T A C G T A C G T A C G T A G T C T G A C A C G T C G A T A C G T A T C G A C G T C G A T A G T C C G T A A C T G A C T G C T G A
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CCTWTGTTCAGGA-
TTTTTTTTTTTTTTCAGGTT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G A C A C G T C G A T A C G T A T C G A C G T C G A T A G T C C G T A A C T G A C T G C T G A A C G T
G A C T A G C T A G C T G A C T G A C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G G C A T C G A T

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CCTWTGTTCAGGA-
TTTTTTTTTTTTTTCAGGTT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G A C A C G T C G A T A C G T A T C G A C G T C G A T A G T C C G T A A C T G A C T G C T G A A C G T
G A C T G A C T A G C T A G C T A G C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G C G A T C G A T

PB0121.1_Foxj3_2/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCTWTGTTCAGGA---
NNCTTTGTTTTGNTNNN
 A C G T A G T C T G A C A C G T C G A T A C G T A T C G A C G T C G A T A G T C C G T A A C T G A C T G C T G A A C G T A C G T A C G T
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCTWTGTTCAGGA-
NNNNTTTGTTTACNNT
 A C G T A C G T A G T C T G A C A C G T C G A T A C G T A T C G A C G T C G A T A G T C C G T A A C T G A C T G C T G A A C G T
G T C A G T C A G C A T C A G T G C A T C A G T C G A T C T A G C G A T C G A T C A G T C T G A A G T C C G A T G C A T C G A T

Sox2/MA0143.3/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCTWTGTTCAGGA
CCTTTGTT-----
 A G T C T G A C A C G T C G A T A C G T A T C G A C G T C G A T A G T C C G T A A C T G A C T G C T G A
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T A C G T A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCTWTGTTCAGGA
-CTATTTTTGG--
 A G T C T G A C A C G T C G A T A C G T A T C G A C G T C G A T A G T C C G T A A C T G A C T G C T G A
A C G T A T G C A G C T G T C A C G A T C G A T A G C T G A C T G C A T C T G A C A T G A C G T A C G T