Information for 1-KAGTTCTGGTATC (Motif 4)

A C G T C G T A A T C G A C G T A C G T A G T C C G A T A C T G T C A G A C G T C G T A G A C T G A T C
Reverse Opposite:
C A T G C G T A A C G T C G T A A G T C G T A C C G T A T A C G C G T A T C G A A T G C C G A T G T C A
p-value:1e-9
log p-value:-2.295e+01
Information Content per bp:1.718
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif5.02%
Number of Background Sequences with motif147.2
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets51.5 +/- 24.7bp
Average Position of motif in Background50.3 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.61
Offset:2
Orientation:forward strand
Alignment:KAGTTCTGGTATC
--GGTCTGGCAT-
 A C G T C G T A A T C G A C G T A C G T A G T C C G A T A C T G T C A G A C G T C G T A G A C T G A T C
A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T

PB0105.1_Arid3a_2/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:KAGTTCTGGTATC---
-NNATNTGATANNNNN
 A C G T C G T A A T C G A C G T A C G T A G T C C G A T A C T G T C A G A C G T C G T A G A C T G A T C A C G T A C G T A C G T
A C G T G T C A C T G A G C T A A G C T G C A T G A C T A T C G T C G A A G C T T C G A A G T C A T C G A C T G C A T G C A G T

PB0122.1_Foxk1_2/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--KAGTTCTGGTATC
NNNTGTTGTTGTTNG
 A C G T A C G T A C G T C G T A A T C G A C G T A C G T A G T C C G A T A C T G T C A G A C G T C G T A G A C T G A T C
C T G A C A T G C T A G G C A T C T A G G C A T A C G T C T A G A G C T A C G T C T A G G A C T C A G T C G A T C A T G

PB0120.1_Foxj1_2/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---KAGTTCTGGTATC
GTNTTGTTGTGANNT-
 A C G T A C G T A C G T A C G T C G T A A T C G A C G T A C G T A G T C C G A T A C T G T C A G A C G T C G T A G A C T G A T C
C A T G A G C T T A C G G A C T G C A T A C T G A C G T G A C T C T A G A G C T A C T G T G C A A G T C T C G A C G A T A C G T

PH0161.1_Six1/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:KAGTTCTGGTATC------
--GATGGGGTATCATTTTT
 A C G T C G T A A T C G A C G T A C G T A G T C C G A T A C T G T C A G A C G T C G T A G A C T G A T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G G C T A C A G T T C A G C T A G A T C G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C A G T G C A T A C G T C A G T

IRF8/MA0652.1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:KAGTTCTGGTATC--
-AGTTTCGGTTTCGN
 A C G T C G T A A T C G A C G T A C G T A G T C C G A T A C T G T C A G A C G T C G T A G A C T G A T C A C G T A C G T
A C G T C T G A T A C G A C G T G C A T A G C T A G T C C T A G A T C G C G A T C G A T A C G T G A T C C T A G C T G A

PB0121.1_Foxj3_2/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----KAGTTCTGGTATC
NNCTTTGTTTTGNTNNN
 A C G T A C G T A C G T A C G T A C G T C G T A A T C G A C G T A C G T A G T C C G A T A C T G T C A G A C G T C G T A G A C T G A T C
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

PB0020.1_Gabpa_1/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---KAGTTCTGGTATC-
NNNNACTTCCGGTATNN
 A C G T A C G T A C G T A C G T C G T A A T C G A C G T A C G T A G T C C G A T A C T G T C A G A C G T C G T A G A C T G A T C A C G T
A C G T C G A T C T G A G T A C C T G A A G T C C G A T C G A T A G T C A G T C A C T G A T C G G A C T C G T A C G A T A C G T C A T G

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:KAGTTCTGGTATC
--GCTGTGGTTT-
 A C G T C G T A A T C G A C G T A C G T A G T C C G A T A C T G T C A G A C G T C G T A G A C T G A T C
A C G T A C G T A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T A C G T

PH0166.1_Six6_2/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:KAGTTCTGGTATC------
--AATAGGGTATCAATATT
 A C G T C G T A A T C G A C G T A C G T A G T C C G A T A C T G T C A G A C G T C G T A G A C T G A T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C G T A C G A T T C G A C T A G C A T G T C A G C A G T C T G A A C G T G A T C G C T A G C T A G A C T G C T A G A C T A C G T