Information for 5-TTTTATTTYT (Motif 11)

A G C T C G A T G C A T C G A T C G T A A G C T A C G T A G C T A G C T A C G T
Reverse Opposite:
C G T A C T G A C T G A T G C A C T G A C G A T C G T A C G T A G C T A C T G A
p-value:1e-4
log p-value:-1.039e+01
Information Content per bp:1.789
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif10.96%
Number of Background Sequences with motif2110.5
Percentage of Background Sequences with motif4.31%
Average Position of motif in Targets57.4 +/- 19.5bp
Average Position of motif in Background49.1 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEF2C/MA0497.1/Jaspar

Match Rank:1
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:TTTTATTTYT-----
TTCTATTTTTAGNNN
 A G C T C G A T G C A T C G A T C G T A A G C T A C G T A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C A G T A G T C A G C T C T G A G C A T G C A T G A C T G A C T C G A T C T G A C A T G G T A C G C T A G A C T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:TTTTATTTYT---
-KCTATTTTTRGH
 A G C T C G A T G C A T C G A T C G T A A G C T A C G T A G C T A G C T A C G T A C G T A C G T A C G T
A C G T C A T G A G T C G A C T C G T A C G A T G C A T G C A T G C A T C G A T C T G A C A T G G T A C

PH0064.1_Hoxb9/Jaspar

Match Rank:3
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATTTYT--
NGANTTTTATGGCTCN
 A C G T A C G T A C G T A C G T A G C T C G A T G C A T C G A T C G T A A G C T A C G T A G C T A G C T A C G T A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

CDX2/MA0465.1/Jaspar

Match Rank:4
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TTTTATTTYT-
TTTTATGGCTN
 A G C T C G A T G C A T C G A T C G T A A G C T A C G T A G C T A G C T A C G T A C G T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

PB0182.1_Srf_2/Jaspar

Match Rank:5
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---TTTTATTTYT----
NNNNTTTTTTTTTNAAC
 A C G T A C G T A C G T A G C T C G A T G C A T C G A T C G T A A G C T A C G T A G C T A G C T A C G T A C G T A C G T A C G T A C G T
C G A T C G T A T C G A A C G T C A G T C A G T C A G T C G A T A C G T A C G T A C G T G A C T G A C T G C A T G C T A T G C A A T G C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTTYT
NTTTTATGAC-
 A C G T A G C T C G A T G C A T C G A T C G T A A G C T A C G T A G C T A G C T A C G T
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:7
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TTTTATTTYT---
-GCTATTTTTAGC
 A G C T C G A T G C A T C G A T C G T A A G C T A C G T A G C T A G C T A C G T A C G T A C G T A C G T
A C G T C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C

MEF2A/MA0052.3/Jaspar

Match Rank:8
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TTTTATTTYT---
-TCTATTTTTAGA
 A G C T C G A T G C A T C G A T C G T A A G C T A C G T A G C T A G C T A C G T A C G T A C G T A C G T
A C G T C A G T G A T C C A G T C T G A C G A T C G A T C G A T G C A T C G A T C T G A C A T G G T C A

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TTTTATTTYT
TTTTATTGC-
 A G C T C G A T G C A T C G A T C G T A A G C T A C G T A G C T A G C T A C G T
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTTYT
NTTTTATTACN
 A C G T A G C T C G A T G C A T C G A T C G T A A G C T A C G T A G C T A G C T A C G T
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C