Information for 4-RAGMAGCCCTGCAGGG (Motif 9)

T C G A C T G A T A C G T G A C C G T A A C T G A G T C A G T C A G T C C G A T A T C G A T G C C G T A A C T G A C T G T C A G
Reverse Opposite:
A G T C A G T C A G T C A C G T A T C G A T G C G C T A C T A G C T A G T C A G G T A C C G A T A C T G A T G C A G C T A G C T
p-value:1e-13
log p-value:-3.085e+01
Information Content per bp:1.712
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.69%
Number of Background Sequences with motif41.9
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets53.3 +/- 22.5bp
Average Position of motif in Background50.0 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.69
Offset:5
Orientation:reverse strand
Alignment:RAGMAGCCCTGCAGGG----
-----DCHCAGCAGGRGGCC
 T C G A C T G A T A C G T G A C C G T A A C T G A G T C A G T C A G T C C G A T A T C G A T G C C G T A A C T G A C T G T C A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.68
Offset:6
Orientation:forward strand
Alignment:RAGMAGCCCTGCAGGG--
------CACAGCAGGGGG
 T C G A C T G A T A C G T G A C C G T A A C T G A G T C A G T C A G T C C G A T A T C G A T G C C G T A A C T G A C T G T C A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.63
Offset:3
Orientation:forward strand
Alignment:RAGMAGCCCTGCAGGG--
---CCACACAGCAGGAGA
 T C G A C T G A T A C G T G A C C G T A A C T G A G T C A G T C A G T C C G A T A T C G A T G C C G T A A C T G A C T G T C A G A C G T A C G T
A C G T A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:RAGMAGCCCTGCAGGG
-----DCTCAGCAGG-
 T C G A C T G A T A C G T G A C C G T A A C T G A G T C A G T C A G T C C G A T A T C G A T G C C G T A A C T G A C T G T C A G
A C G T A C G T A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:forward strand
Alignment:RAGMAGCCCTGCAGGG--
---CCACACAGCAGGAGA
 T C G A C T G A T A C G T G A C C G T A A C T G A G T C A G T C A G T C C G A T A T C G A T G C C G T A A C T G A C T G T C A G A C G T A C G T
A C G T A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:forward strand
Alignment:RAGMAGCCCTGCAGGG--
---GAGCACAGCAGGACA
 T C G A C T G A T A C G T G A C C G T A A C T G A G T C A G T C A G T C C G A T A T C G A T G C C G T A A C T G A C T G T C A G A C G T A C G T
A C G T A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:RAGMAGCCCTGCAGGG-
----TGCCCTGAGGGCA
 T C G A C T G A T A C G T G A C C G T A A C T G A G T C A G T C A G T C C G A T A T C G A T G C C G T A A C T G A C T G T C A G A C G T
A C G T A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:8
Score:0.58
Offset:4
Orientation:forward strand
Alignment:RAGMAGCCCTGCAGGG-
----TGCCCTGAGGGCA
 T C G A C T G A T A C G T G A C C G T A A C T G A G T C A G T C A G T C C G A T A T C G A T G C C G T A A C T G A C T G T C A G A C G T
A C G T A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:forward strand
Alignment:RAGMAGCCCTGCAGGG-
----TGCCCTGAGGGCA
 T C G A C T G A T A C G T G A C C G T A A C T G A G T C A G T C A G T C C G A T A T C G A T G C C G T A A C T G A C T G T C A G A C G T
A C G T A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A

Bcl6/MA0463.1/Jaspar

Match Rank:10
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:RAGMAGCCCTGCAGGG--
----NGCTTTCTAGGAAN
 T C G A C T G A T A C G T G A C C G T A A C T G A G T C A G T C A G T C C G A T A T C G A T G C C G T A A C T G A C T G T C A G A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C A T G G T A C G A C T A G C T G A C T A G T C A G C T C G T A C T A G C A T G T C G A G C T A G T C A